# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oh0A	131	2.71e-14	d.17.4.3	87004
1nwwA	149	3.30e-14	d.17.4.8	86306
2bngA	149	3.76e-14		
1dmmA	131	5.46e-14	d.17.4.3	38114
1ohpA	125	1.09e-13	d.17.4.3	118702
2a15A	139	1.31e-13	d.17.4.3	125973
1s5aA	150	4.70e-13	d.17.4.10	98525
2geyA	158	6.65e-13		
1sjwA	144	7.13e-13	d.17.4.9	98899
1tuhA	156	2.74e-12	d.17.4.11	107345
2gxfA	142	5.05e-10		
3cu3A	172	1.48e-08		
2rfrA	155	2.44e-08		
1hkxA	147	1.07e-07	d.17.4.7	83567
3cnxA	170	1.15e-07		
2chcA	170	2.89e-07		
3bb9A	148	3.46e-07		
2r4iA	123	9.06e-07		
2imjA	166	9.57e-07		
2ux0A	143	1.23e-06		
3b7cA	122	1.36e-06		
2f86B	143	4.36e-06		
3blzA	128	5.86e-05		
2owpA	129	0.000262		
2rgqA	144	0.001122		
1tp6A	128	0.006051	d.17.4.12	107184
1m98A	317	0.008998	a.175.1.1,d.17.4.6	78866,78867
2b1xB	172	0.05943	d.17.4.4	127677
1idpA	172	0.1777	d.17.4.1	83685
2gbwB	174	0.7655		
2qiyA	154	1.019		
1zo2A	129	1.025		
1gybA	125	1.701	d.17.4.2	70744
1gy7A	125	2.094	d.17.4.2	70738
2bmoB	194	2.149	d.17.4.4	128806
1zx2A	147	2.382		
1uliB	187	2.998	d.17.4.4	107923
1jkgA	140	3.330	d.17.4.2	66795
1gy6A	127	5.343	d.17.4.2	70736
1o7nB	194	5.789	d.17.4.4	81164
1of5B	184	10.10	d.17.4.2	86934
2a22A	215	21.55	d.159.1.7	126025
2ckfB	174	23.17		
2fxtA	192	24.42		
2b02A	119	30.08		
1w24A	182	32.92	d.159.1.7	120579
1x0oA	119	35.02		
2vi7A	177	45.81		
1si6X	282	47.27	d.151.1.2	118968
2q14A	410	56.83		
3bhxA	709	59.99		
2c1cA	312	61.41	c.56.5.1	129630
1mszA	86	62.05	d.68.7.1	79428
1cbfA	285	63.63	c.90.1.1	35587
2shpA	525	65.54	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
2pdrA	149	67.40		
1rtqA	299	69.44	c.56.5.4	97819
1qq9A	284	70.47	c.56.5.4	33841