# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oh0A	131	6.91e-20	d.17.4.3	87004
1nwwA	149	1.39e-19	d.17.4.8	86306
1dmmA	131	1.52e-19	d.17.4.3	38114
2bngA	149	1.59e-19		
2a15A	139	3.69e-19	d.17.4.3	125973
1ohpA	125	1.43e-18	d.17.4.3	118702
1s5aA	150	3.88e-18	d.17.4.10	98525
2geyA	158	1.25e-17		
1sjwA	144	1.46e-17	d.17.4.9	98899
1tuhA	156	7.17e-17	d.17.4.11	107345
2gxfA	142	1.59e-14		
2rfrA	155	9.19e-12		
3cu3A	172	2.01e-11		
1hkxA	147	8.30e-11	d.17.4.7	83567
3bb9A	148	1.46e-10		
3cnxA	170	2.45e-10		
2chcA	170	5.16e-10		
2ux0A	143	5.92e-10		
3b7cA	122	1.06e-09		
2r4iA	123	1.46e-09		
2imjA	166	2.92e-09		
2f86B	143	3.13e-09		
3blzA	128	2.76e-07		
2owpA	129	1.15e-06		
2rgqA	144	4.84e-06		
1m98A	317	2.66e-05	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	7.05e-05	d.17.4.12	107184
1idpA	172	0.006907	d.17.4.1	83685
2b1xB	172	0.01120	d.17.4.4	127677
2qiyA	154	0.04738		
1gybA	125	0.1621	d.17.4.2	70744
2gbwB	174	0.1733		
1zo2A	129	0.1743		
1gy7A	125	0.1881	d.17.4.2	70738
1gy6A	127	0.2606	d.17.4.2	70736
1uliB	187	0.3505	d.17.4.4	107923
2bmoB	194	0.4288	d.17.4.4	128806
1zx2A	147	0.4322		
1jkgA	140	0.7261	d.17.4.2	66795
1o7nB	194	1.539	d.17.4.4	81164
1of5B	184	5.394	d.17.4.2	86934
1w24A	182	6.161	d.159.1.7	120579
2vi7A	177	9.897		
2ckfB	174	11.51		
2a22A	215	11.63	d.159.1.7	126025
1x0oA	119	13.59		
2qguA	211	13.72		
2fxtA	192	20.93		
2b02A	119	21.87		
2z10A	194	25.19		
1xg2B	153	25.26		
2boqA	331	25.94		
1x91A	153	26.85	a.29.6.1	114975
2og5A	357	27.17		
2cw9A	194	27.68	d.17.4.13	130920
1a3c	181	30.66		
1h2iA	209	30.97	d.50.1.3	76550
1rtqA	299	32.45	c.56.5.4	97819
2dx0A	138	32.95		
2yxxA	386	33.73		
1bywA	110	35.00	d.110.3.6	40912
2cmgA	262	35.54		
1m3sA	186	38.08	c.80.1.3	78573
1ds1A	324	55.88	b.82.2.2	28127
1qfxA	460	57.09	c.60.1.2	33994
1mszA	86	60.08	d.68.7.1	79428
2pd8A	149	61.99		
1hh8A	213	66.09	a.118.8.1	61042
2cvjA	180	66.50		
1nd6A	354	66.54	c.60.1.2	80407
1yq2A	1024	71.81	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	123843,123844,123845,123846,123847
1of5A	221	75.07	d.17.4.2	86933
1a19A	90	77.24	c.9.1.1	30831
1cbfA	285	79.27	c.90.1.1	35587
3tglA	269	79.29	c.69.1.17	34733
1w30A	201	81.10	c.61.1.1	114118
2pdrA	149	81.61		
2ywlA	180	82.68		
2rg8A	165	84.56		
2bhmA	164	84.66		
1ys1X	320	86.19