# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a15A 139 1.72e-08 d.17.4.3 125973 2bngA 149 2.02e-08 1ohpA 125 2.49e-08 d.17.4.3 118702 1nwwA 149 2.83e-08 d.17.4.8 86306 1dmmA 131 9.75e-08 d.17.4.3 38114 1oh0A 131 1.30e-07 d.17.4.3 87004 1tuhA 156 2.52e-07 d.17.4.11 107345 1s5aA 150 3.82e-07 d.17.4.10 98525 2geyA 158 4.32e-07 2gxfA 142 6.91e-06 1sjwA 144 1.04e-05 d.17.4.9 98899 3cu3A 172 2.15e-05 2imjA 166 0.000673 1m98A 317 0.000992 a.175.1.1,d.17.4.6 78866,78867 3cnxA 170 0.001413 3bb9A 148 0.001670 3b7cA 122 0.002565 2rfrA 155 0.003154 2chcA 170 0.003693 1tp6A 128 0.004469 d.17.4.12 107184 2ux0A 143 0.006546 1hkxA 147 0.01136 d.17.4.7 83567 2owpA 129 0.01675 2r4iA 123 0.05976 3blzA 128 0.06811 2rgqA 144 0.09623 2f86B 143 0.1059 2b1xB 172 0.6165 d.17.4.4 127677 1idpA 172 1.840 d.17.4.1 83685 1uliB 187 1.911 d.17.4.4 107923 2dxnA 274 2.516 2qiyA 154 3.560 1of5B 184 3.891 d.17.4.2 86934 3bczA 293 4.948 2gbwB 174 5.121 1zo2A 129 6.152 2fxtA 192 6.408 2ckfB 174 8.434 2v95A 371 11.49 1zx2A 147 12.86 1jkgA 140 16.76 d.17.4.2 66795 1oc0A 379 17.96 e.1.1.1 86790 1vqqA 646 18.42 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1gy7A 125 19.27 d.17.4.2 70738 1o7nB 194 19.81 d.17.4.4 81164 2c1wA 292 20.09 d.294.1.1 129644 2bmoB 194 21.80 d.17.4.4 128806 2bkyA 97 21.82 d.68.6.1 128715 2frnA 278 26.58 c.66.1.47 133993 1u2zA 433 27.72 c.66.1.31 107626 1gybA 125 29.07 d.17.4.2 70744 1jmoA 480 29.17 e.1.1.1 77138 1id0A 152 29.26 d.122.1.3 66111 2e57A 637 29.29 2fhpA 187 29.75 c.66.1.46 133495 2ip2A 334 31.95 2pwyA 258 32.23 2yvyA 278 32.36 2v3aA 384 32.64 1r62A 160 34.23 d.122.1.3 104816 1mxgA 435 37.16 b.71.1.1,c.1.8.1 85193,85194 2b5tI 432 37.29 e.1.1.1 127905 2f7kA 327 39.33 1ysrA 150 39.60 d.122.1.3 123981 2ddmA 283 39.76 2afwA 329 40.73 c.56.5.8 126707 2p7jA 287 41.75 2yvtA 260 42.50 1l3iA 192 42.73 c.66.1.22 77676 2ol2A 395 43.66 1ixmA 192 44.10 d.123.1.1 41114 2nvaA 372 44.94 2elfA 370 47.62 2d4gA 171 48.86 1qlpA 394 49.58 e.1.1.1 42628 1p0zA 131 49.93 d.110.6.1 93882 2riqA 160 50.21 3grs 478 51.69 2fafA 608 51.87 3b9fI 395 52.50 1d2eA 397 53.38 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2omkA 231 53.63 2yx0A 342 54.59 1aipA 405 55.53 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2cw9A 194 56.07 d.17.4.13 130920 1wojA 214 56.13 1gy6A 127 56.69 d.17.4.2 70736 2yquA 455 60.53 1gp1A 198 60.84 c.47.1.10 33059 1u55A 188 61.39 d.278.1.1 107677 2dm9A 198 61.88 2hp7A 183 62.05 1hd2A 161 64.07 c.47.1.10 60962 2axoA 270 64.37 c.47.1.19 127496 1a9xB 379 66.45 c.8.3.1,c.23.16.1 30732,31409 2h4pA 394 66.49 1qd9A 124 68.94 d.79.1.1 39758 3ck2A 176 69.49 2b02A 119 70.95 2esrA 177 73.83 c.66.1.46 132344 2ouxA 286 74.53 1lj5A 379 76.02 e.1.1.1 73928 2rgxA 206 77.11 1yxaA 398 77.12 2h9uA 102 77.40 1kk1A 410 78.21 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2e0aA 394 79.35 1v33A 366 80.41 d.264.1.1 100278 2ijaA 295 81.49 2d0jA 246 82.44 2culA 232 82.53 c.3.1.7 130813 1vdwA 254 83.42 e.7.1.1 100569 1t0bA 252 84.40 c.23.16.6 106199 3ladA 476 85.58 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2yx1A 336 85.73 2a22A 215 87.07 d.159.1.7 126025 1o97C 264 88.10 c.26.2.3 81232