# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nwwA 149 5.98e-21 d.17.4.8 86306 1oh0A 131 1.02e-19 d.17.4.3 87004 1dmmA 131 1.27e-19 d.17.4.3 38114 2bngA 149 1.56e-19 1ohpA 125 1.58e-19 d.17.4.3 118702 1ocvA 125 2.91e-19 d.17.4.3 86810 1opy 131 5.78e-19 2geyA 158 7.53e-19 1sjwA 144 1.39e-18 d.17.4.9 98899 2a15A 139 3.57e-18 d.17.4.3 125973 1s5aA 150 4.27e-18 d.17.4.10 98525 1tuhA 156 9.58e-17 d.17.4.11 107345 3cu3A 172 1.76e-12 2gxfA 142 6.65e-12 2rfrA 155 4.54e-11 2r4iA 123 7.64e-11 2ux0A 143 4.98e-10 2chcA 170 6.85e-10 3bb9A 148 1.98e-09 3cnxA 170 2.12e-09 2imjA 166 3.38e-09 3b7cA 122 5.88e-09 1hkxA 147 6.25e-09 d.17.4.7 83567 2f86B 143 8.37e-08 3blzA 128 1.04e-06 1tp6A 128 4.64e-05 d.17.4.12 107184 2owpA 129 0.000779 1m98A 317 0.000790 a.175.1.1,d.17.4.6 78866,78867 3stdA 165 0.02580 d.17.4.1 38073 2rgqA 144 0.03170 2gbwB 174 0.06110 2ckfB 174 0.06390 1std 172 0.09211 1zo2A 129 0.1678 1zx2A 147 0.3285 2b1xB 172 0.4575 d.17.4.4 127677 1gy7A 125 0.4697 d.17.4.2 70738 1of5B 184 0.5927 d.17.4.2 86934 2qguA 211 1.256 1gy6A 127 2.504 d.17.4.2 70736 2cw9A 194 3.168 d.17.4.13 130920 1gybA 125 3.471 d.17.4.2 70744 3bczA 293 4.625 2qiyA 154 4.849 1jkgA 140 5.018 d.17.4.2 66795 2z10A 194 5.891 1vicA 262 7.120 c.68.1.13 100756 1uliB 187 8.682 d.17.4.4 107923 3bbjA 272 11.28 1ounA 127 11.61 d.17.4.2 38090 2eh6A 375 15.85 1idpA 172 22.06 d.17.4.1 83685 2vi7A 177 24.56 2pb2A 420 29.69 1hqz1 141 30.31 2cfuA 658 30.38 2qmlA 198 32.09 1l1zA 274 33.79 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1qopB 396 33.89 c.79.1.1 35270 1ds1A 324 34.74 b.82.2.2 28127 1j32A 388 35.26 c.67.1.1 77067 2b02A 119 39.56 1w24A 182 39.85 d.159.1.7 120579 2bjhA 260 40.05 1y7lA 316 41.88 c.79.1.1 122695 1x8hA 228 42.04 d.157.1.1 114961 2p5qA 170 43.98 1yvoA 172 44.10 d.108.1.1 124106 2fsrA 195 44.82 d.108.1.1 134036 1vqqA 646 46.98 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1yreA 197 47.58 d.108.1.1 123919 2ordA 397 47.59 1yr0A 175 48.46 d.108.1.1 123905 2yweA 600 48.86 1oihA 301 52.84 b.82.2.5 93051 2afwA 329 53.05 c.56.5.8 126707 1vhsA 175 55.57 d.108.1.1 100698 2fckA 181 56.65 d.108.1.1 133272 2i2qA 137 57.17 2yruA 118 57.40 1tvjA 166 58.25 2dkoA 146 59.53 1q40B 219 62.09 d.17.4.2 95771 2sak 121 63.87 1x0oA 119 64.57 1x67A 146 66.26 2bmoB 194 66.30 d.17.4.4 128806 2ia7A 134 66.57 1tuaA 191 67.12 d.51.1.1,d.51.1.1 107321,107322 1h9oA 112 67.91 d.93.1.1 60837 1on0A 158 70.21 d.108.1.1 87095 2bb3A 221 70.40 c.90.1.1 128257 2esrA 177 71.84 c.66.1.46 132344 2og5A 357 72.22 1yk3A 210 72.69 d.108.1.1 123493 1d4tA 104 73.06 d.93.1.1 40537 2pd8A 149 73.89 2dx0A 138 73.92 2h6fB 437 74.37 a.102.4.3 136186 1fs5A 266 77.17 c.124.1.1 65044 2c1cA 312 78.29 c.56.5.1 129630 1xi9A 406 80.89 c.67.1.1 115355 2pw4A 188 81.83 1l3lA 234 82.71 a.4.6.2,d.110.5.1 73541,73542 1zdrA 164 84.42 1nx8A 273 85.79 b.82.2.8 86374 1a1aA 107 87.28 d.93.1.1 40449 1j7jA 178 88.98 c.61.1.1 84131