# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.07e-19	d.17.4.8	86306
1oh0A	131	6.95e-19	d.17.4.3	87004
1dmmA	131	9.89e-19	d.17.4.3	38114
1ohpA	125	1.13e-18	d.17.4.3	118702
1opy	131	2.87e-18		
1ocvA	125	3.25e-18	d.17.4.3	86810
2bngA	149	3.71e-18		
2geyA	158	1.34e-17		
1sjwA	144	2.23e-17	d.17.4.9	98899
1s5aA	150	2.75e-17	d.17.4.10	98525
2a15A	139	5.83e-17	d.17.4.3	125973
1tuhA	156	1.32e-15	d.17.4.11	107345
3cu3A	172	6.03e-12		
2gxfA	142	1.29e-11		
2rfrA	155	1.49e-10		
2r4iA	123	3.75e-10		
2chcA	170	2.40e-09		
2ux0A	143	2.77e-09		
3bb9A	148	6.57e-09		
2imjA	166	1.07e-08		
1hkxA	147	1.28e-08	d.17.4.7	83567
3cnxA	170	1.53e-08		
3b7cA	122	2.88e-08		
2f86B	143	3.78e-07		
3blzA	128	2.13e-06		
1tp6A	128	8.53e-05	d.17.4.12	107184
2owpA	129	0.000897		
1m98A	317	0.003366	a.175.1.1,d.17.4.6	78866,78867
3stdA	165	0.04266	d.17.4.1	38073
2ckfB	174	0.07176		
2rgqA	144	0.07571		
2gbwB	174	0.08820		
1std	172	0.1579		
1zo2A	129	0.3231		
1zx2A	147	0.5497		
2b1xB	172	0.5513	d.17.4.4	127677
2qguA	211	1.237		
1of5B	184	1.346	d.17.4.2	86934
1gy7A	125	1.899	d.17.4.2	70738
2cw9A	194	3.202	d.17.4.13	130920
3bczA	293	5.212		
1gy6A	127	5.492	d.17.4.2	70736
1jkgA	140	5.846	d.17.4.2	66795
2qiyA	154	6.094		
1vicA	262	11.68	c.68.1.13	100756
3bbjA	272	13.92		
1gybA	125	14.11	d.17.4.2	70744
2z10A	194	16.58		
2yweA	600	17.95		
2cfuA	658	27.44		
1x8hA	228	27.87	d.157.1.1	114961
1ounA	127	28.67	d.17.4.2	38090
1yr0A	175	29.68	d.108.1.1	123905
2vi7A	177	32.43		
2eh6A	375	32.95		
1w24A	182	35.38	d.159.1.7	120579
2qmlA	198	35.63		
1yvoA	172	36.96	d.108.1.1	124106
1x0oA	119	38.72		
1yreA	197	38.85	d.108.1.1	123919
2pb2A	420	39.50		
1j32A	388	39.85	c.67.1.1	77067
1x8gA	227	41.31	d.157.1.1	114960
1y7lA	316	41.74	c.79.1.1	122695
1uliB	187	42.09	d.17.4.4	107923
2bjhA	260	43.75		
1ds1A	324	46.51	b.82.2.2	28127
1idpA	172	46.89	d.17.4.1	83685
1wgsA	133	47.22	b.34.13.3	114622
1vqqA	646	47.98	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2fckA	181	49.13	d.108.1.1	133272
1l1zA	274	52.59	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2fxtA	192	52.68		
2afwA	329	53.18	c.56.5.8	126707
2yruA	118	54.19		
1uteA	313	54.42	d.159.1.1	42078
2b02A	119	60.09		
2c1cA	312	68.23	c.56.5.1	129630
2esrA	177	68.91	c.66.1.46	132344
1h9oA	112	73.29	d.93.1.1	60837
1jqgA	433	73.76	c.56.5.1,d.58.3.1	71791,71792
1lp8A	254	74.01	d.165.1.1	91082
1q40B	219	75.28	d.17.4.2	95771
1l3lA	234	78.33	a.4.6.2,d.110.5.1	73541,73542
1m4lA	307	80.13	c.56.5.1	78604
1tuaA	191	80.96	d.51.1.1,d.51.1.1	107321,107322
2h6fB	437	81.70	a.102.4.3	136186
2rdmA	132	84.34		
1tvjA	166	84.56		
2pw4A	188	88.12		
3b46A	447	88.44		
1bavA	309	88.79	c.56.5.1	33806
2pd8A	149	88.95