# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	7.92e-18	d.17.4.8	86306
1dmmA	131	2.23e-16	d.17.4.3	38114
1oh0A	131	2.41e-16	d.17.4.3	87004
2bngA	149	2.57e-16		
2geyA	158	2.90e-16		
1ohpA	125	3.42e-16	d.17.4.3	118702
1opy	131	5.22e-16		
1sjwA	144	8.34e-16	d.17.4.9	98899
1ocvA	125	9.44e-16	d.17.4.3	86810
1s5aA	150	2.67e-15	d.17.4.10	98525
2a15A	139	6.26e-15	d.17.4.3	125973
1tuhA	156	3.03e-14	d.17.4.11	107345
2gxfA	142	2.12e-10		
3cu3A	172	4.82e-10		
2rfrA	155	9.36e-10		
2r4iA	123	1.14e-09		
2chcA	170	4.19e-09		
2ux0A	143	1.44e-08		
3bb9A	148	1.70e-08		
3cnxA	170	4.74e-08		
1hkxA	147	6.42e-08	d.17.4.7	83567
3b7cA	122	6.86e-08		
2imjA	166	8.31e-08		
2f86B	143	1.50e-07		
3blzA	128	1.95e-06		
1tp6A	128	0.000899	d.17.4.12	107184
2owpA	129	0.002628		
1m98A	317	0.01047	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.02402		
1zo2A	129	0.06769		
2gbwB	174	0.07955		
2ckfB	174	0.08517		
1zx2A	147	0.09697		
3stdA	165	0.1011	d.17.4.1	38073
1gy6A	127	0.3264	d.17.4.2	70736
1std	172	0.3343		
1gy7A	125	0.4912	d.17.4.2	70738
2qiyA	154	1.077		
1gybA	125	1.186	d.17.4.2	70744
1ounA	127	1.695	d.17.4.2	38090
1jkgA	140	2.149	d.17.4.2	66795
1of5B	184	2.538	d.17.4.2	86934
2b1xB	172	5.998	d.17.4.4	127677
2cw9A	194	6.059	d.17.4.13	130920
1vicA	262	8.628	c.68.1.13	100756
2qguA	211	11.23		
2z10A	194	12.27		
1wgsA	133	13.22	b.34.13.3	114622
1idpA	172	13.35	d.17.4.1	83685
3bczA	293	13.50		
1x8hA	228	14.25	d.157.1.1	114961
1x8gA	227	16.08	d.157.1.1	114960
1w24A	182	26.24	d.159.1.7	120579
2i2qA	137	27.05		
1l1zA	274	28.52	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2vi7A	177	28.99		
1yr0A	175	32.11	d.108.1.1	123905
1uliB	187	38.42	d.17.4.4	107923
2cfuA	658	40.03		
2blcA	238	44.10		
3bbjA	272	44.86		
2q7tA	301	49.79		
1tuaA	191	50.06	d.51.1.1,d.51.1.1	107321,107322
1yk3A	210	54.51	d.108.1.1	123493
2fxtA	192	55.57		
1h9oA	112	55.71	d.93.1.1	60837
2qmlA	198	55.92		
1yvoA	172	57.59	d.108.1.1	124106
1vqqA	646	60.72	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
3b2yA	275	63.28		
1zdrA	164	63.86		
2yruA	118	64.64		
2j66A	428	68.36		
2bl9A	238	71.97		
1h7eA	245	72.27	c.68.1.13	60717
1euvA	221	73.34	d.3.1.7	37133
1ds1A	324	74.54	b.82.2.2	28127
1a19A	90	74.76	c.9.1.1	30831
1m4lA	307	76.77	c.56.5.1	78604
2j6bA	109	76.97	d.321.1.1	138078
1tvjA	166	79.52		
1j32A	388	82.22	c.67.1.1	77067
2eh6A	375	85.23		
2ouiA	360	87.87