# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	5.25e-20	d.17.4.8	86306
2bngA	149	5.87e-19		
1oh0A	131	9.72e-19	d.17.4.3	87004
1dmmA	131	1.23e-18	d.17.4.3	38114
1ohpA	125	1.30e-18	d.17.4.3	118702
1opy	131	3.04e-18		
1ocvA	125	5.97e-18	d.17.4.3	86810
2geyA	158	6.39e-18		
1sjwA	144	2.37e-17	d.17.4.9	98899
1s5aA	150	4.60e-17	d.17.4.10	98525
2a15A	139	7.27e-17	d.17.4.3	125973
1tuhA	156	4.95e-16	d.17.4.11	107345
3cu3A	172	6.59e-12		
2gxfA	142	1.25e-11		
2r4iA	123	6.35e-11		
2rfrA	155	8.69e-11		
2chcA	170	6.03e-10		
2ux0A	143	6.30e-10		
3b7cA	122	3.22e-09		
3cnxA	170	3.66e-09		
3bb9A	148	4.32e-09		
1hkxA	147	1.03e-08	d.17.4.7	83567
2imjA	166	3.13e-08		
2f86B	143	8.21e-08		
3blzA	128	9.64e-07		
1tp6A	128	0.000196	d.17.4.12	107184
2owpA	129	0.000586		
1m98A	317	0.000906	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.03031		
2ckfB	174	0.04057		
2gbwB	174	0.04077		
3stdA	165	0.04556	d.17.4.1	38073
1zo2A	129	0.1116		
1std	172	0.1163		
1zx2A	147	0.2360		
1gy7A	125	0.3801	d.17.4.2	70738
1gy6A	127	0.5795	d.17.4.2	70736
2qguA	211	1.885		
2z10A	194	1.902		
1jkgA	140	2.068	d.17.4.2	66795
1of5B	184	2.231	d.17.4.2	86934
1gybA	125	2.311	d.17.4.2	70744
2b1xB	172	2.787	d.17.4.4	127677
1ounA	127	3.777	d.17.4.2	38090
2qiyA	154	5.148		
2cw9A	194	5.436	d.17.4.13	130920
1vicA	262	5.714	c.68.1.13	100756
1w24A	182	7.066	d.159.1.7	120579
2pb2A	420	16.33		
1yr0A	175	18.70	d.108.1.1	123905
1on0A	158	21.99	d.108.1.1	87095
2fsrA	195	22.35	d.108.1.1	134036
2fckA	181	24.32	d.108.1.1	133272
1vhsA	175	25.67	d.108.1.1	100698
1oihA	301	27.26	b.82.2.5	93051
1idpA	172	28.19	d.17.4.1	83685
1j32A	388	28.58	c.67.1.1	77067
2eh6A	375	29.86		
1y7lA	316	30.38	c.79.1.1	122695
2cfuA	658	31.86		
1yreA	197	31.89	d.108.1.1	123919
1tu1A	148	32.97	d.107.1.3	107316
2i2qA	137	35.95		
2p5qA	170	39.38		
1yk3A	210	39.47	d.108.1.1	123493
1yvoA	172	40.80	d.108.1.1	124106
2qmlA	198	41.53		
1x8hA	228	42.57	d.157.1.1	114961
1l1zA	274	48.58	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1rec	201	54.28		
3bbjA	272	54.87		
2vi7A	177	55.17		
1qysA	106	55.19	k.41.1.1	96603
2pw4A	188	55.46		
2hs5A	239	58.45		
1lmzA	187	59.91	a.96.1.4	74037
1ds1A	324	62.93	b.82.2.2	28127
1cg2A	393	63.16	c.56.5.4,d.58.19.1	33844,39360
1t0qA	498	65.72	a.25.1.2	106220
1z7dA	433	66.47	c.67.1.4	124600
1x67A	146	66.67		
1bc8C	93	68.58	a.4.5.21	16168
1qopB	396	69.18	c.79.1.1	35270
2afwA	329	70.64	c.56.5.8	126707
1z2wA	192	71.68	d.159.1.7	124390
2h8lA	252	74.42		
2yweA	600	75.51		
1hqz1	141	76.10		
1tvjA	166	76.60		
2jfrA	234	78.32		
2ordA	397	81.09		
1txoA	237	82.22	d.219.1.1	112781
1bjwA	382	83.07	c.67.1.1	34349
1b3bA	415	83.39	c.2.1.7,c.58.1.1	30244,33892
1lp8A	254	85.87	d.165.1.1	91082
2yruA	118	86.91		
2oixA	186	87.13