# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.61e-20	d.17.4.8	86306
1oh0A	131	2.16e-19	d.17.4.3	87004
2bngA	149	2.79e-19		
1dmmA	131	3.15e-19	d.17.4.3	38114
1ohpA	125	3.70e-19	d.17.4.3	118702
1opy	131	9.99e-19		
2geyA	158	1.30e-18		
1ocvA	125	1.55e-18	d.17.4.3	86810
1sjwA	144	3.64e-18	d.17.4.9	98899
1s5aA	150	9.23e-18	d.17.4.10	98525
2a15A	139	1.78e-17	d.17.4.3	125973
1tuhA	156	1.25e-16	d.17.4.11	107345
3cu3A	172	3.87e-12		
2gxfA	142	1.23e-11		
2rfrA	155	4.20e-11		
2r4iA	123	1.30e-10		
2chcA	170	3.74e-10		
2ux0A	143	7.98e-10		
3cnxA	170	3.87e-09		
3bb9A	148	4.37e-09		
3b7cA	122	4.72e-09		
1hkxA	147	1.40e-08	d.17.4.7	83567
2imjA	166	1.86e-08		
2f86B	143	1.24e-07		
3blzA	128	1.09e-06		
1tp6A	128	0.000159	d.17.4.12	107184
1m98A	317	0.000671	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.000750		
2rgqA	144	0.05156		
2ckfB	174	0.05358		
2gbwB	174	0.05479		
3stdA	165	0.07036	d.17.4.1	38073
1zo2A	129	0.1849		
1std	172	0.2114		
1zx2A	147	0.3579		
1gy7A	125	0.8496	d.17.4.2	70738
1of5B	184	1.991	d.17.4.2	86934
1gy6A	127	2.040	d.17.4.2	70736
2z10A	194	2.342		
2b1xB	172	2.437	d.17.4.4	127677
1jkgA	140	2.896	d.17.4.2	66795
2qguA	211	3.062		
1gybA	125	4.506	d.17.4.2	70744
2qiyA	154	5.811		
1vicA	262	6.159	c.68.1.13	100756
2cw9A	194	7.574	d.17.4.13	130920
1ounA	127	12.95	d.17.4.2	38090
1w24A	182	14.73	d.159.1.7	120579
2pb2A	420	18.09		
1j32A	388	18.18	c.67.1.1	77067
1y7lA	316	19.02	c.79.1.1	122695
2fsrA	195	20.68	d.108.1.1	134036
2eh6A	375	22.63		
1oihA	301	23.47	b.82.2.5	93051
1on0A	158	23.68	d.108.1.1	87095
1vhsA	175	24.15	d.108.1.1	100698
1yr0A	175	24.32	d.108.1.1	123905
2p5qA	170	27.06		
1yvoA	172	34.39	d.108.1.1	124106
2bb3A	221	36.77	c.90.1.1	128257
1yreA	197	37.64	d.108.1.1	123919
1bc8C	93	38.27	a.4.5.21	16168
2fckA	181	38.97	d.108.1.1	133272
2cfuA	658	39.22		
1qopB	396	39.26	c.79.1.1	35270
1x8hA	228	42.71	d.157.1.1	114961
1uliB	187	43.15	d.17.4.4	107923
1xi9A	406	43.90	c.67.1.1	115355
2pw4A	188	45.92		
1idpA	172	46.07	d.17.4.1	83685
2hs5A	239	48.47		
1bjwA	382	49.12	c.67.1.1	34349
1ds1A	324	51.69	b.82.2.2	28127
2z61A	370	53.55		
1rec	201	54.14		
2afwA	329	56.11	c.56.5.8	126707
1t0qA	498	57.58	a.25.1.2	106220
1b5pA	385	57.75	c.67.1.1	90403
1l1zA	274	58.93	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2h8lA	252	60.47		
1cg2A	393	61.18	c.56.5.4,d.58.19.1	33844,39360
3b46A	447	62.99		
2i2qA	137	63.27		
2yweA	600	64.87		
3bczA	293	64.98		
2ordA	397	68.69		
2vi7A	177	69.49		
1gvjA	146	69.77	a.4.5.21	90525
1lmzA	187	71.23	a.96.1.4	74037
2qmlA	198	73.96		
1j7jA	178	75.37	c.61.1.1	84131
2bjhA	260	76.35		
3bbjA	272	76.75		
1v71A	323	76.81	c.79.1.1	119859
1z7dA	433	77.65	c.67.1.4	124600
2bkxA	242	79.24		
1qysA	106	79.78	k.41.1.1	96603
1jy1A	464	81.59	d.136.1.3,d.136.1.3	67438,67439
1fs5A	266	81.92	c.124.1.1	65044
1b3bA	415	84.62	c.2.1.7,c.58.1.1	30244,33892
1yk3A	210	86.96	d.108.1.1	123493
1arsA	396	88.17	c.67.1.1	34287
2jfrA	234	88.52		
2yruA	118	89.22