# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nwwA 149 4.73e-21 d.17.4.8 86306 1oh0A 131 7.85e-20 d.17.4.3 87004 1dmmA 131 8.73e-20 d.17.4.3 38114 2bngA 149 9.19e-20 1ohpA 125 1.12e-19 d.17.4.3 118702 1opy 131 3.31e-19 2geyA 158 4.33e-19 1ocvA 125 5.68e-19 d.17.4.3 86810 1sjwA 144 1.43e-18 d.17.4.9 98899 1s5aA 150 3.28e-18 d.17.4.10 98525 2a15A 139 6.10e-18 d.17.4.3 125973 1tuhA 156 6.35e-17 d.17.4.11 107345 3cu3A 172 2.11e-12 2gxfA 142 5.61e-12 2rfrA 155 2.49e-11 2r4iA 123 4.32e-11 2chcA 170 2.21e-10 2ux0A 143 4.54e-10 3b7cA 122 1.62e-09 3cnxA 170 1.94e-09 3bb9A 148 2.67e-09 1hkxA 147 7.64e-09 d.17.4.7 83567 2imjA 166 1.50e-08 2f86B 143 6.48e-08 3blzA 128 9.02e-07 1tp6A 128 0.000133 d.17.4.12 107184 1m98A 317 0.000511 a.175.1.1,d.17.4.6 78866,78867 2owpA 129 0.000623 2rgqA 144 0.03861 3stdA 165 0.05474 d.17.4.1 38073 2ckfB 174 0.05734 2gbwB 174 0.07828 1std 172 0.1466 1zo2A 129 0.1725 1zx2A 147 0.2563 1gy7A 125 0.7291 d.17.4.2 70738 1gy6A 127 1.256 d.17.4.2 70736 1of5B 184 1.868 d.17.4.2 86934 2z10A 194 2.275 1jkgA 140 2.654 d.17.4.2 66795 2qguA 211 2.913 2b1xB 172 3.274 d.17.4.4 127677 1gybA 125 3.553 d.17.4.2 70744 2qiyA 154 5.100 2cw9A 194 6.043 d.17.4.13 130920 1vicA 262 6.552 c.68.1.13 100756 1w24A 182 8.158 d.159.1.7 120579 1ounA 127 10.22 d.17.4.2 38090 2pb2A 420 15.89 2fsrA 195 18.10 d.108.1.1 134036 1oihA 301 19.93 b.82.2.5 93051 1on0A 158 20.41 d.108.1.1 87095 1j32A 388 21.29 c.67.1.1 77067 2p5qA 170 21.70 1vhsA 175 22.16 d.108.1.1 100698 1y7lA 316 24.11 c.79.1.1 122695 1yr0A 175 25.76 d.108.1.1 123905 1yreA 197 25.80 d.108.1.1 123919 2eh6A 375 29.90 1yvoA 172 30.22 d.108.1.1 124106 2fckA 181 32.14 d.108.1.1 133272 1idpA 172 34.50 d.17.4.1 83685 2bb3A 221 35.53 c.90.1.1 128257 2cfuA 658 40.01 2pw4A 188 41.32 1rec 201 43.67 2h8lA 252 44.81 1qopB 396 45.84 c.79.1.1 35270 1ds1A 324 47.65 b.82.2.2 28127 1x8hA 228 49.57 d.157.1.1 114961 1bc8C 93 49.62 a.4.5.21 16168 2hs5A 239 50.11 1t0qA 498 51.65 a.25.1.2 106220 1xi9A 406 52.66 c.67.1.1 115355 1bjwA 382 52.79 c.67.1.1 34349 1lmzA 187 53.18 a.96.1.4 74037 3bczA 293 55.90 2i2qA 137 57.06 1yk3A 210 57.07 d.108.1.1 123493 2qmlA 198 57.08 2vi7A 177 58.73 2yweA 600 58.89 3bbjA 272 60.81 1cg2A 393 63.83 c.56.5.4,d.58.19.1 33844,39360 1b5pA 385 64.52 c.67.1.1 90403 2afwA 329 67.47 c.56.5.8 126707 1z7dA 433 68.04 c.67.1.4 124600 1q40B 219 68.66 d.17.4.2 95771 2z61A 370 69.60 2bkxA 242 71.62 1l1zA 274 72.36 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1j7jA 178 73.50 c.61.1.1 84131 1qysA 106 74.47 k.41.1.1 96603 1vqqA 646 76.25 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 3b46A 447 77.04 1b3bA 415 78.97 c.2.1.7,c.58.1.1 30244,33892 1hqz1 141 80.44 1otjA 283 81.56 b.82.2.5 93517 1a8y 367 82.31 2ordA 397 83.64 2yruA 118 84.46 1v71A 323 85.47 c.79.1.1 119859 1uliB 187 85.87 d.17.4.4 107923 1tvjA 166 88.28