# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	5.00e-16	d.17.4.8	86306
2bngA	149	2.62e-15		
1oh0A	131	5.83e-15	d.17.4.3	87004
1ocvA	125	8.61e-15	d.17.4.3	86810
1ohpA	125	8.75e-15	d.17.4.3	118702
2geyA	158	9.40e-15		
1dmmA	131	1.24e-14	d.17.4.3	38114
1opy	131	2.58e-14		
2a15A	139	7.95e-14	d.17.4.3	125973
1sjwA	144	1.01e-13	d.17.4.9	98899
1s5aA	150	1.44e-13	d.17.4.10	98525
1tuhA	156	4.19e-13	d.17.4.11	107345
3cu3A	172	4.50e-10		
2gxfA	142	2.77e-09		
2rfrA	155	6.11e-09		
2chcA	170	3.27e-08		
2ux0A	143	3.45e-08		
2r4iA	123	5.95e-08		
3cnxA	170	1.23e-07		
3bb9A	148	1.24e-07		
3b7cA	122	3.22e-07		
1hkxA	147	3.35e-07	d.17.4.7	83567
2f86B	143	1.48e-06		
2imjA	166	4.04e-06		
3blzA	128	1.77e-05		
2owpA	129	0.004768		
1tp6A	128	0.01477	d.17.4.12	107184
1m98A	317	0.02326	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.02685		
3stdA	165	0.06099	d.17.4.1	38073
2ckfB	174	0.07946		
2gbwB	174	0.1281		
1zo2A	129	0.2038		
1zx2A	147	0.2566		
1std	172	0.3014		
1gy7A	125	0.6470	d.17.4.2	70738
2b1xB	172	0.8595	d.17.4.4	127677
1gy6A	127	1.059	d.17.4.2	70736
1of5B	184	1.082	d.17.4.2	86934
2qguA	211	1.580		
2qiyA	154	1.588		
1jkgA	140	2.577	d.17.4.2	66795
1gybA	125	2.815	d.17.4.2	70744
1ounA	127	3.563	d.17.4.2	38090
1idpA	172	6.761	d.17.4.1	83685
2z10A	194	10.55		
2cw9A	194	10.88	d.17.4.13	130920
1uliB	187	12.31	d.17.4.4	107923
2cfuA	658	14.57		
1l1zA	274	19.64	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2fxtA	192	37.17		
2p5qA	170	37.41		
1vqqA	646	43.95	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1w24A	182	53.63	d.159.1.7	120579
2hfsA	332	55.32		
1cg2A	393	57.94	c.56.5.4,d.58.19.1	33844,39360
1h2eA	207	60.31	c.60.1.1	70857
1a19A	90	66.09	c.9.1.1	30831
1y7lA	316	66.38	c.79.1.1	122695
1ae9A	179	66.63	d.163.1.1	42153
2bjhA	260	66.75		
2c1cA	312	66.87	c.56.5.1	129630
1j32A	388	67.20	c.67.1.1	77067
2o3oA	254	70.80		
2afwA	329	72.45	c.56.5.8	126707
2qmlA	198	73.10		
1j7jA	178	76.00	c.61.1.1	84131
1h72C	296	77.42	d.14.1.5,d.58.26.1	60712,60713
1q40B	219	80.97	d.17.4.2	95771
1yr0A	175	83.72	d.108.1.1	123905
2dx0A	138	83.86		
1k47A	337	84.94	d.14.1.5,d.58.26.4	72040,72041
1yk3A	210	86.88	d.108.1.1	123493
2cc3A	150	88.83