# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	6.71e-19	d.17.4.8	86306
1oh0A	131	9.56e-18	d.17.4.3	87004
1dmmA	131	1.07e-17	d.17.4.3	38114
1ohpA	125	1.71e-17	d.17.4.3	118702
2bngA	149	1.83e-17		
2geyA	158	3.09e-17		
1opy	131	3.25e-17		
1ocvA	125	5.68e-17	d.17.4.3	86810
1sjwA	144	7.47e-17	d.17.4.9	98899
1s5aA	150	2.86e-16	d.17.4.10	98525
2a15A	139	3.95e-16	d.17.4.3	125973
1tuhA	156	6.47e-15	d.17.4.11	107345
3cu3A	172	3.48e-11		
2gxfA	142	4.59e-11		
2rfrA	155	3.88e-10		
2r4iA	123	4.30e-10		
2chcA	170	2.41e-09		
2ux0A	143	4.15e-09		
3bb9A	148	1.17e-08		
3cnxA	170	1.25e-08		
3b7cA	122	3.42e-08		
1hkxA	147	3.97e-08	d.17.4.7	83567
2imjA	166	4.12e-08		
2f86B	143	3.25e-07		
3blzA	128	6.60e-06		
1tp6A	128	0.000186	d.17.4.12	107184
2owpA	129	0.001890		
1m98A	317	0.01438	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.03914		
3stdA	165	0.05246	d.17.4.1	38073
2ckfB	174	0.1003		
1std	172	0.1264		
2gbwB	174	0.1742		
1zo2A	129	0.2773		
1zx2A	147	0.4407		
1gy7A	125	1.034	d.17.4.2	70738
2qguA	211	1.838		
1gy6A	127	2.430	d.17.4.2	70736
2b1xB	172	3.123	d.17.4.4	127677
1of5B	184	3.546	d.17.4.2	86934
2qiyA	154	3.849		
2z10A	194	4.026		
1gybA	125	5.923	d.17.4.2	70744
1jkgA	140	6.452	d.17.4.2	66795
2cw9A	194	10.57	d.17.4.13	130920
1vicA	262	11.44	c.68.1.13	100756
1ounA	127	12.43	d.17.4.2	38090
1idpA	172	18.13	d.17.4.1	83685
3bczA	293	18.45		
3bbjA	272	21.47		
1w24A	182	27.11	d.159.1.7	120579
2eh6A	375	31.97		
2pb2A	420	32.30		
1qopB	396	33.06	c.79.1.1	35270
2bjhA	260	37.49		
1yk3A	210	38.39	d.108.1.1	123493
1j32A	388	38.99	c.67.1.1	77067
1y7lA	316	39.25	c.79.1.1	122695
1yr0A	175	39.31	d.108.1.1	123905
2yweA	600	42.15		
1xi9A	406	44.82	c.67.1.1	115355
2vptA	215	47.03		
1yvoA	172	48.72	d.108.1.1	124106
1x0oA	119	55.59		
1h9oA	112	57.07	d.93.1.1	60837
1hqz1	141	57.64		
1tvjA	166	60.50		
1l1zA	274	60.73	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2bb3A	221	63.92	c.90.1.1	128257
2qmlA	198	66.23		
2i2qA	137	69.73		
2vi7A	177	69.75		
1h2eA	207	78.32	c.60.1.1	70857
1uliB	187	79.32	d.17.4.4	107923
1ds1A	324	83.85	b.82.2.2	28127
2yruA	118	84.01		
1a1aA	107	84.93	d.93.1.1	40449
1zdrA	164	85.77		
1q40B	219	86.75	d.17.4.2	95771
1rec	201	87.26		
1x8hA	228	89.35	d.157.1.1	114961