# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.27e-20	d.17.4.8	86306
1oh0A	131	4.39e-19	d.17.4.3	87004
1dmmA	131	6.55e-19	d.17.4.3	38114
2bngA	149	1.01e-18		
1ohpA	125	1.10e-18	d.17.4.3	118702
1opy	131	1.76e-18		
1ocvA	125	3.33e-18	d.17.4.3	86810
2geyA	158	3.56e-18		
1sjwA	144	8.50e-18	d.17.4.9	98899
1s5aA	150	2.11e-17	d.17.4.10	98525
2a15A	139	2.84e-17	d.17.4.3	125973
1tuhA	156	5.39e-16	d.17.4.11	107345
3cu3A	172	6.50e-12		
2gxfA	142	1.54e-11		
2rfrA	155	4.18e-11		
2r4iA	123	1.33e-10		
2chcA	170	1.15e-09		
2ux0A	143	1.36e-09		
3bb9A	148	4.09e-09		
3cnxA	170	4.37e-09		
3b7cA	122	7.60e-09		
1hkxA	147	9.15e-09	d.17.4.7	83567
2imjA	166	4.66e-08		
2f86B	143	8.17e-08		
3blzA	128	1.17e-06		
1tp6A	128	0.000390	d.17.4.12	107184
2owpA	129	0.001281		
1m98A	317	0.01724	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.03934		
3stdA	165	0.1070	d.17.4.1	38073
2gbwB	174	0.1207		
1zo2A	129	0.1332		
2ckfB	174	0.1336		
1zx2A	147	0.1993		
1std	172	0.3366		
1gy7A	125	0.8151	d.17.4.2	70738
1gy6A	127	0.9812	d.17.4.2	70736
1of5B	184	1.283	d.17.4.2	86934
1jkgA	140	2.050	d.17.4.2	66795
2qiyA	154	2.351		
2qguA	211	2.802		
1gybA	125	3.517	d.17.4.2	70744
2cw9A	194	4.211	d.17.4.13	130920
1ounA	127	5.457	d.17.4.2	38090
2b1xB	172	7.424	d.17.4.4	127677
2z10A	194	18.10		
1qopB	396	29.41	c.79.1.1	35270
3bbjA	272	35.59		
1y7lA	316	37.01	c.79.1.1	122695
1zdrA	164	38.44		
1q40B	219	39.64	d.17.4.2	95771
3bczA	293	41.26		
1vicA	262	42.64	c.68.1.13	100756
2i2qA	137	43.10		
2bjhA	260	44.88		
2fxtA	192	45.29		
1idpA	172	46.40	d.17.4.1	83685
1jqgA	433	46.60	c.56.5.1,d.58.3.1	71791,71792
1yr0A	175	48.53	d.108.1.1	123905
2pb2A	420	51.33		
1tvjA	166	54.04		
2vi7A	177	54.75		
2yruA	118	57.86		
1yvoA	172	58.35	d.108.1.1	124106
2eh6A	375	59.52		
1ds1A	324	63.66	b.82.2.2	28127
1lmzA	187	65.83	a.96.1.4	74037
1uteA	313	68.69	d.159.1.1	42078
1j32A	388	73.36	c.67.1.1	77067
2fckA	181	74.03	d.108.1.1	133272
1x0oA	119	75.25		
2afwA	329	78.85	c.56.5.8	126707
2h8lA	252	79.48		
1yreA	197	81.64	d.108.1.1	123919
1fvuB	125	82.68	d.169.1.1	42346
1ae9A	179	83.59	d.163.1.1	42153
2bb3A	221	84.17	c.90.1.1	128257
1l1zA	274	84.65	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1hqz1	141	86.34		
1tuaA	191	87.97	d.51.1.1,d.51.1.1	107321,107322