# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	4.90e-19	d.17.4.8	86306
1oh0A	131	1.31e-17	d.17.4.3	87004
1dmmA	131	1.64e-17	d.17.4.3	38114
2bngA	149	2.24e-17		
1ohpA	125	2.62e-17	d.17.4.3	118702
2geyA	158	2.90e-17		
1opy	131	4.11e-17		
1ocvA	125	1.06e-16	d.17.4.3	86810
1sjwA	144	1.15e-16	d.17.4.9	98899
1s5aA	150	1.66e-16	d.17.4.10	98525
2a15A	139	5.00e-16	d.17.4.3	125973
1tuhA	156	3.33e-15	d.17.4.11	107345
3cu3A	172	5.28e-11		
2gxfA	142	5.69e-11		
2rfrA	155	1.73e-10		
2r4iA	123	6.44e-10		
2chcA	170	3.08e-09		
2ux0A	143	5.12e-09		
3bb9A	148	9.63e-09		
3cnxA	170	1.63e-08		
1hkxA	147	2.82e-08	d.17.4.7	83567
3b7cA	122	3.29e-08		
2imjA	166	4.67e-08		
2f86B	143	2.38e-07		
3blzA	128	2.23e-06		
1tp6A	128	0.000656	d.17.4.12	107184
2owpA	129	0.003516		
1m98A	317	0.01503	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.03039		
2ckfB	174	0.08360		
3stdA	165	0.1146	d.17.4.1	38073
2gbwB	174	0.1200		
1zo2A	129	0.1855		
1zx2A	147	0.2342		
1std	172	0.4007		
1gy7A	125	1.229	d.17.4.2	70738
1gy6A	127	1.935	d.17.4.2	70736
1of5B	184	2.887	d.17.4.2	86934
2qiyA	154	3.033		
1jkgA	140	3.035	d.17.4.2	66795
2b1xB	172	3.652	d.17.4.4	127677
1gybA	125	4.478	d.17.4.2	70744
2cw9A	194	5.972	d.17.4.13	130920
2qguA	211	7.835		
1ounA	127	12.38	d.17.4.2	38090
1vicA	262	15.92	c.68.1.13	100756
3bczA	293	21.84		
2z10A	194	24.18		
1x8hA	228	25.66	d.157.1.1	114961
1uliB	187	33.37	d.17.4.4	107923
2cfuA	658	33.85		
2i2qA	137	34.94		
1on0A	158	35.50	d.108.1.1	87095
1j32A	388	36.22	c.67.1.1	77067
2eh6A	375	37.96		
1y7lA	316	38.04	c.79.1.1	122695
1x8gA	227	39.84	d.157.1.1	114960
2vi7A	177	40.41		
1idpA	172	41.89	d.17.4.1	83685
1qopB	396	45.44	c.79.1.1	35270
1yr0A	175	46.90	d.108.1.1	123905
2pb2A	420	47.08		
3bbjA	272	50.07		
2bjhA	260	53.05		
1yvoA	172	56.57	d.108.1.1	124106
2yruA	118	56.64		
1jqgA	433	61.18	c.56.5.1,d.58.3.1	71791,71792
2c1cA	312	65.08	c.56.5.1	129630
1vqqA	646	66.91	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1l1zA	274	69.38	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1ds1A	324	69.41	b.82.2.2	28127
1xi9A	406	69.54	c.67.1.1	115355
1wgsA	133	75.18	b.34.13.3	114622
1zdrA	164	75.38		
2fxtA	192	76.72		
2afwA	329	77.87	c.56.5.8	126707
3b2yA	275	83.14		
3b46A	447	83.58		
1fs5A	266	84.24	c.124.1.1	65044
1fvuB	125	86.35	d.169.1.1	42346
1yk3A	210	86.70	d.108.1.1	123493
1of5A	221	87.55	d.17.4.2	86933
2qmlA	198	89.15