# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.55e-19	d.17.4.8	86306
1oh0A	131	3.43e-18	d.17.4.3	87004
1dmmA	131	5.05e-18	d.17.4.3	38114
2bngA	149	7.92e-18		
1ohpA	125	7.96e-18	d.17.4.3	118702
2geyA	158	1.26e-17		
1opy	131	1.48e-17		
1ocvA	125	2.13e-17	d.17.4.3	86810
1sjwA	144	4.20e-17	d.17.4.9	98899
1s5aA	150	7.61e-17	d.17.4.10	98525
2a15A	139	2.19e-16	d.17.4.3	125973
1tuhA	156	3.72e-15	d.17.4.11	107345
3cu3A	172	1.93e-11		
2gxfA	142	3.83e-11		
2rfrA	155	1.34e-10		
2r4iA	123	3.08e-10		
2chcA	170	1.03e-09		
2ux0A	143	3.72e-09		
3cnxA	170	8.68e-09		
3bb9A	148	9.22e-09		
3b7cA	122	1.14e-08		
1hkxA	147	1.36e-08	d.17.4.7	83567
2imjA	166	5.18e-08		
2f86B	143	7.71e-08		
3blzA	128	1.60e-06		
1tp6A	128	0.000605	d.17.4.12	107184
2owpA	129	0.003116		
1m98A	317	0.009250	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.03304		
2gbwB	174	0.06104		
3stdA	165	0.06936	d.17.4.1	38073
2ckfB	174	0.06988		
1zo2A	129	0.1479		
1zx2A	147	0.1836		
1std	172	0.2056		
1gy7A	125	0.5382	d.17.4.2	70738
1gy6A	127	0.7028	d.17.4.2	70736
1of5B	184	1.874	d.17.4.2	86934
2qiyA	154	1.885		
1gybA	125	2.082	d.17.4.2	70744
1jkgA	140	2.241	d.17.4.2	66795
1ounA	127	4.467	d.17.4.2	38090
2b1xB	172	4.671	d.17.4.4	127677
2qguA	211	4.740		
2cw9A	194	9.338	d.17.4.13	130920
2z10A	194	11.16		
1vicA	262	15.83	c.68.1.13	100756
1idpA	172	20.74	d.17.4.1	83685
3bczA	293	25.98		
2bjhA	260	26.73		
1j32A	388	36.51	c.67.1.1	77067
2eh6A	375	37.19		
1qopB	396	37.46	c.79.1.1	35270
3bbjA	272	39.22		
2i2qA	137	40.34		
1y7lA	316	44.00	c.79.1.1	122695
1yr0A	175	45.91	d.108.1.1	123905
1q40B	219	47.06	d.17.4.2	95771
2pb2A	420	51.61		
1lmzA	187	53.97	a.96.1.4	74037
1x8hA	228	55.18	d.157.1.1	114961
1txoA	237	59.12	d.219.1.1	112781
1l1zA	274	59.15	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1yvoA	172	59.44	d.108.1.1	124106
2vi7A	177	60.04		
1wgsA	133	60.33	b.34.13.3	114622
1xi9A	406	61.91	c.67.1.1	115355
1uliB	187	65.83	d.17.4.4	107923
3b46A	447	69.79		
1zdrA	164	72.02		
2fxtA	192	72.11		
1on0A	158	77.00	d.108.1.1	87095
1ds1A	324	82.35	b.82.2.2	28127
2cfuA	658	83.51		
1fvuB	125	83.95	d.169.1.1	42346
1vqqA	646	86.57	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2p5qA	170	87.35		
1of5A	221	89.84	d.17.4.2	86933