# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.22e-15	d.17.4.8	86306
1oh0A	131	4.44e-15	d.17.4.3	87004
2bngA	149	1.41e-14		
1ohpA	125	1.45e-14	d.17.4.3	118702
1dmmA	131	1.64e-14	d.17.4.3	38114
1ocvA	125	3.63e-14	d.17.4.3	86810
1opy	131	4.50e-14		
1sjwA	144	7.88e-14	d.17.4.9	98899
2a15A	139	8.07e-14	d.17.4.3	125973
2geyA	158	1.76e-13		
1s5aA	150	3.51e-13	d.17.4.10	98525
1tuhA	156	3.84e-12	d.17.4.11	107345
3cu3A	172	5.67e-10		
2rfrA	155	4.00e-09		
2gxfA	142	7.28e-09		
2r4iA	123	6.49e-08		
2chcA	170	7.07e-08		
2ux0A	143	3.73e-07		
3cnxA	170	4.36e-07		
3bb9A	148	8.54e-07		
1hkxA	147	1.13e-06	d.17.4.7	83567
3b7cA	122	1.37e-06		
2imjA	166	2.53e-06		
2f86B	143	8.28e-06		
3blzA	128	3.27e-05		
2owpA	129	0.01581		
1m98A	317	0.02251	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.03542	d.17.4.12	107184
2ckfB	174	0.08993		
2gbwB	174	0.09082		
1zx2A	147	0.3509		
2rgqA	144	0.3525		
3stdA	165	0.4201	d.17.4.1	38073
1std	172	0.7159		
1zo2A	129	0.8670		
1gy7A	125	1.512	d.17.4.2	70738
2b1xB	172	2.306	d.17.4.4	127677
1gy6A	127	3.081	d.17.4.2	70736
1of5B	184	5.579	d.17.4.2	86934
2z10A	194	6.872		
2qiyA	154	7.844		
1jkgA	140	9.190	d.17.4.2	66795
1gybA	125	9.913	d.17.4.2	70744
1ounA	127	11.06	d.17.4.2	38090
1b3bA	415	19.14	c.2.1.7,c.58.1.1	30244,33892
1uliB	187	24.32	d.17.4.4	107923
2qguA	211	30.72		
1idpA	172	34.77	d.17.4.1	83685
2c1cA	312	38.73	c.56.5.1	129630
2p5qA	170	45.17		
2cfuA	658	47.24		
1m5yA	408	47.45	a.223.1.2,d.26.1.1,d.26.1.1	78664,78665,78666
2cw9A	194	57.66	d.17.4.13	130920
1b26A	416	58.70	c.2.1.7,c.58.1.1	30232,33880
1lokA	291	61.50	c.56.5.4	78122
1cg2A	393	63.57	c.56.5.4,d.58.19.1	33844,39360
2nogA	173	67.09		
1amp	291	70.30		
2bo9A	308	73.61	c.56.5.1	128897
1x0oA	119	76.20		
2bmoB	194	76.98	d.17.4.4	128806
1eexA	554	77.63	c.1.19.3	29650
1rtqA	299	79.47	c.56.5.4	97819
1fjgT	106	85.67	a.7.6.1	16338