# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	2.11e-17	d.17.4.8	86306
1oh0A	131	6.76e-17	d.17.4.3	87004
1dmmA	131	1.20e-16	d.17.4.3	38114
2bngA	149	2.04e-16		
1ohpA	125	2.36e-16	d.17.4.3	118702
1opy	131	5.03e-16		
1ocvA	125	5.33e-16	d.17.4.3	86810
2a15A	139	1.49e-15	d.17.4.3	125973
2geyA	158	2.13e-15		
1sjwA	144	2.43e-15	d.17.4.9	98899
1s5aA	150	5.96e-15	d.17.4.10	98525
1tuhA	156	9.64e-14	d.17.4.11	107345
3cu3A	172	4.32e-11		
2gxfA	142	1.61e-10		
2rfrA	155	3.18e-10		
2r4iA	123	5.30e-09		
2chcA	170	8.23e-09		
2ux0A	143	9.51e-09		
3b7cA	122	2.49e-08		
3bb9A	148	3.03e-08		
1hkxA	147	6.20e-08	d.17.4.7	83567
3cnxA	170	1.08e-07		
2f86B	143	2.50e-07		
2imjA	166	6.35e-07		
3blzA	128	7.27e-06		
2owpA	129	0.001282		
1tp6A	128	0.003705	d.17.4.12	107184
1m98A	317	0.008385	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.01886		
2ckfB	174	0.03874		
2gbwB	174	0.05398		
3stdA	165	0.05751	d.17.4.1	38073
1zx2A	147	0.09599		
1std	172	0.1359		
1zo2A	129	0.1456		
1gy6A	127	0.2184	d.17.4.2	70736
1gy7A	125	0.5776	d.17.4.2	70738
1ounA	127	1.372	d.17.4.2	38090
2b1xB	172	1.608	d.17.4.4	127677
2qiyA	154	1.610		
1of5B	184	1.960	d.17.4.2	86934
1gybA	125	2.464	d.17.4.2	70744
2qguA	211	2.484		
1jkgA	140	2.577	d.17.4.2	66795
2z10A	194	10.00		
2cw9A	194	10.11	d.17.4.13	130920
1idpA	172	12.81	d.17.4.1	83685
1rtqA	299	14.37	c.56.5.4	97819
1cg2A	393	23.57	c.56.5.4,d.58.19.1	33844,39360
1amp	291	24.93		
1uliB	187	26.19	d.17.4.4	107923
1yr0A	175	26.55	d.108.1.1	123905
2nogA	173	36.10		
2fckA	181	38.51	d.108.1.1	133272
1ae9A	179	40.55	d.163.1.1	42153
2qmlA	198	40.92		
2vi7A	177	44.78		
1jqgA	433	53.27	c.56.5.1,d.58.3.1	71791,71792
1ds1A	324	55.23	b.82.2.2	28127
2bmoB	194	60.78	d.17.4.4	128806
1oihA	301	62.18	b.82.2.5	93051
1kwmA	402	71.46	c.56.5.1,d.58.3.1	73079,73080
2qflA	267	72.36		
1nnwA	252	72.43	d.159.1.5	80674
1x8hA	228	75.41	d.157.1.1	114961
1b3bA	415	76.49	c.2.1.7,c.58.1.1	30244,33892
1nx8A	273	76.72	b.82.2.8	86374
2dx0A	138	78.32		
2og5A	357	78.41		
1yvoA	172	79.17	d.108.1.1	124106
1lokA	291	80.68	c.56.5.4	78122
1h8lA	380	81.88	b.3.2.1,c.56.5.1	65737,65738
2c1cA	312	82.08	c.56.5.1	129630
2cfuA	658	82.31		
1wdjA	187	87.81	c.52.1.27	114536
1of5A	221	88.23	d.17.4.2	86933