Best Alignments for T0475

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bngA/T0475-2bngA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bngA/T0475-2bngA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2737e-122.90e-52
1ocvA/T0475-1ocvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ocvA/T0475-1ocvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2131e-129.22e-52 d.17.4.3
2geyA/T0475-2geyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2geyA/T0475-2geyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7603e-112.49e-46
1nwwA/T0475-1nwwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nwwA/T0475-1nwwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1023e-114.69e-49 d.17.4.8
1tuhA/T0475-1tuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tuhA/T0475-1tuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8860e-116.69e-49 d.17.4.11
2gxfA/T0475-2gxfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gxfA/T0475-2gxfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6026e-072.23e-34
3b7cA/T0475-3b7cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3b7cA/T0475-3b7cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2614e-077.24e-31
2imjA/T0475-2imjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2imjA/T0475-2imjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6937e-072.07e-36
3cu3A/T0475-3cu3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cu3A/T0475-3cu3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3747e-064.43e-37
2ux0A/T0475-2ux0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ux0A/T0475-2ux0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6224e-068.63e-31

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001