Best Alignments for T0475

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bngA/T0475-2bngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bngA/T0475-2bngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0292e-132.39e-41
1buqA/T0475-1buqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1buqA/T0475-1buqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1950e-118.08e-38 1opy d.17.4.3
2geyA/T0475-2geyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2geyA/T0475-2geyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1671e-111.71e-37
1nwwA/T0475-1nwwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nwwA/T0475-1nwwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3583e-101.81e-41 d.17.4.8
1tuhA/T0475-1tuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tuhA/T0475-1tuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4068e-103.65e-38 d.17.4.11
2gxfA/T0475-2gxfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gxfA/T0475-2gxfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0997e-063.59e-27
3b7cA/T0475-3b7cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3b7cA/T0475-3b7cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7341e-062.98e-22
3cu3A/T0475-3cu3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cu3A/T0475-3cu3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3421e-057.70e-24
2imjA/T0475-2imjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2imjA/T0475-2imjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5257e-053.93e-25
2ux0A/T0475-2ux0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ux0A/T0475-2ux0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0850e-041.41e-22

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001