# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dmmA 131 7.22e-16 1opy d.17.4.3 38114 1oh0A 131 9.33e-16 d.17.4.3 87004 1opy 131 1.01e-15 1opy 1ocvA 125 2.05e-15 d.17.4.3 86810 1ohpA 125 4.68e-15 d.17.4.3 118702 2geyA 158 1.58e-14 2bngA 149 3.72e-14 1nwwA 149 5.77e-14 d.17.4.8 86306 1tuhA 156 8.70e-14 d.17.4.11 107345 1s5aA 150 1.40e-13 d.17.4.10 98525 2a15A 139 5.13e-13 d.17.4.3 125973 2imjA 166 3.14e-11 1sjwA 144 7.11e-11 d.17.4.9 98899 2gxfA 142 4.55e-09 2ux0A 143 2.09e-08 3b7cA 122 2.31e-08 3cu3A 172 2.69e-08 1hkxA 147 2.91e-08 d.17.4.7 83567 2chcA 170 8.25e-08 1m98A 317 1.82e-07 a.175.1.1,d.17.4.6 78866,78867 3cnxA 170 1.87e-06 2rgqA 144 2.16e-06 2rfrA 155 5.90e-06 1zo2A 129 6.93e-05 3bb9A 148 7.11e-05 2f86B 143 2.49e-04 1tp6A 128 3.60e-04 d.17.4.12 107184 2owpA 129 4.00e-04 2r4iA 123 7.68e-04 1gy6A 127 2.51e-03 d.17.4.2 70736 1ounA 127 3.93e-03 1ounA d.17.4.2 38090 2qiyA 154 1.17e-02 3blzA 128 1.53e-02 1zx2A 147 2.02e-02 1l1zA 274 5.08e-02 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1idpA 172 7.73e-02 d.17.4.1 83685 1yr0A 175 9.86e-02 d.108.1.1 123905 3stdA 165 1.89e-01 3stdA d.17.4.1 38073 1r2zA 274 2.17e-01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1jkgA 140 2.91e-01 d.17.4.2 66795 1gy7A 125 3.70e-01 d.17.4.2 70738 1gybA 125 3.95e-01 d.17.4.2 70744 1std 172 5.10e-01 3stdA 1uliB 187 5.62e-01 d.17.4.4 107923 1ucdA 190 6.49e-01 d.124.1.1 107767 1x8hA 228 7.11e-01 d.157.1.1 114961 1x8gA 227 7.14e-01 d.157.1.1 114960 2qdsA 227 7.59e-01 2novA 496 9.80e-01 2nvmA 126 1.01e+00 d.326.1.1 138631 1ppjD 241 1.02e+00 a.3.1.3,f.23.11.1 104258,104259 1o5uA 101 1.46e+00 b.82.1.8 92518 2ob3A 330 1.70e+00 2nlvA 112 1.90e+00 d.326.1.1 138362 2nwvA 114 1.96e+00 d.326.1.1 138720 1i0dA 332 2.04e+00 1pscA c.1.9.3 61487 2f57A 317 2.21e+00 3c86A 328 2.51e+00 2c30A 321 2.56e+00 2r1iA 172 2.69e+00 1r8sE 203 2.85e+00 a.118.3.1 97248 2d2jA 329 3.65e+00 c.1.9.3 131175 1o0wA 252 3.97e+00 a.149.1.1,d.50.1.1 80751,80752 2jgqA 233 4.02e+00 1pbv 195 4.17e+00 1pbv 1pbvA 195 4.17e+00 a.118.3.1 19179 1elwA 118 4.21e+00 1a17 a.118.8.1 19207 2inpC 328 4.38e+00 2hfsA 332 4.82e+00 1bjwA 382 4.91e+00 1bjwA c.67.1.1 34349 1hl9A 449 4.95e+00 b.71.1.3,c.1.8.11 90650,90651 1b04A 318 5.24e+00 1b04A d.142.2.2 41579 1qp8A 303 5.51e+00 1qp8A c.2.1.4,c.23.12.1 30092,31352 1r8mE 203 5.58e+00 a.118.3.1 97242 1o6dA 163 5.61e+00 c.116.1.3 92567 1dcqA 278 5.65e+00 1dcqA d.211.1.1,g.45.1.1 19178,45326 2gagA 965 6.12e+00 1e85A 127 7.10e+00 1bbhA a.24.3.2 16549 2a0mA 316 7.46e+00 c.42.1.1 125960 2yx0A 342 7.65e+00 2h8lA 252 7.89e+00 2avkA 136 8.11e+00 1xknA 355 8.17e+00 d.126.1.6 115414 2j0iA 303 8.18e+00 3cswA 285 8.77e+00 1fm2A 169 8.87e+00 1fm2A d.153.1.2 59877 1vjpA 394 9.68e+00 c.2.1.3,d.81.1.3 100828,100829 2e57A 637 1.04e+01 1g7nA 131 1.04e+01 b.60.1.2 83274 1b5pA 385 1.04e+01 c.67.1.1 90403 2gjsA 176 1.08e+01 c.37.1.8 135287 2b1xB 172 1.19e+01 d.17.4.4 127677 1gvjA 146 1.22e+01 a.4.5.21 90525 1q7lA 198 1.25e+01 c.56.5.4 96044 2fztA 79 1.27e+01 a.46.3.1 134476 1qysA 106 1.32e+01 k.41.1.1 96603 2iqhA 499 1.36e+01 1wxcB 134 1.37e+01 1v6tA 255 1.37e+01 c.6.2.5 113550 1g66A 207 1.41e+01 1bs9 c.69.1.30 31329 2oocA 113 1.41e+01 1dd9A 338 1.46e+01 1dd9A e.13.1.1 43254 1y44A 320 1.48e+01 d.157.1.7 122608 3cinA 394 1.55e+01 1ub1A 133 1.57e+01 d.10.1.3 99140 2rdzA 452 1.68e+01 2e7yA 280 1.69e+01 2eb0A 307 1.70e+01 1w36D 608 1.79e+01 c.37.1.19,c.37.1.19 114128,114129 2dxqA 150 1.84e+01 2o70A 174 1.90e+01 1tdzA 272 1.91e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2gbwB 174 1.94e+01 1rsgA 516 2.04e+01 1914 232 2.04e+01 1914 1or0A 160 2.15e+01 d.153.1.2 93445 1t6cA 315 2.23e+01 c.55.1.8,c.55.1.8 106558,106559 1wy9A 147 2.24e+01 1mszA 86 2.26e+01 d.68.7.1 79428 2avuE 192 2.29e+01 1qq9A 284 2.35e+01 1xjo c.56.5.4 33841 2nptB 100 2.37e+01 d.15.2.2 138449 2bh9A 489 2.37e+01 1xjo 284 2.41e+01 1xjo 1wmhB 86 2.41e+01 d.15.2.2 114745 1vkkA 154 2.44e+01 d.109.1.2 108669 2osxA 481 2.45e+01 1p0zA 131 2.46e+01 d.110.6.1 93882 1jmkC 230 2.46e+01 c.69.1.22 71747 1ckmA 330 2.55e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1ta8A 332 2.58e+01 d.142.2.2 112375 2hd9A 145 2.61e+01 3cgvA 397 2.63e+01 1jlwA 219 2.75e+01 a.45.1.1,c.47.1.5 71741,71742 1avmA 201 2.91e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 2vqeP 88 2.92e+01 1fjgP 88 2.95e+01 1emwA d.27.1.1 38444 2dk3A 86 3.00e+01 1qb7A 236 3.02e+01 1qb7A c.61.1.1 34087 1tkjA 284 3.14e+01 c.56.5.4 119296 1qqeA 292 3.14e+01 1qqeA a.118.8.1 19210 2oiwA 136 3.17e+01 1bsmA 201 3.24e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1qo8A 566 3.35e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1x2gA 337 3.36e+01 3cx5D 248 3.40e+01 1fc3A 120 3.43e+01 1fc3A a.4.6.3 16237 2q8gA 407 3.44e+01 2ywrA 216 3.46e+01 2obiA 183 3.48e+01 2fxtA 192 3.52e+01 1ezvD 245 3.52e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 1r6wA 322 3.53e+01 c.1.11.2,d.54.1.1 97165,97166 2be3A 226 3.56e+01 d.218.1.8 128349 2ownA 262 3.57e+01 2r2nA 425 3.64e+01 2i2xB 258 3.68e+01 1o5zA 442 3.70e+01 c.59.1.2,c.72.2.2 92530,92531 2cmgA 262 3.76e+01 2p8tA 200 3.80e+01 1tw9A 206 3.81e+01 a.45.1.1,c.47.1.5 107381,107382 2icuA 229 3.83e+01 1n9lA 109 3.83e+01 d.110.3.6 85468 2dcnA 311 3.92e+01 c.72.1.1 131374 1wmuB 146 3.96e+01 a.1.1.2 109417 1pjjA 271 4.03e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1aop 497 4.11e+01 2aop 1uoyA 64 4.13e+01 g.3.19.1 99709 1aopA 497 4.13e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2jcdA 345 4.15e+01 1smlA 269 4.20e+01 1smlA d.157.1.1 42053 1vekA 84 4.25e+01 a.5.2.1 113636 3b9qA 302 4.29e+01 1yarA 233 4.30e+01 d.153.1.4 122837 2h36X 112 4.36e+01 2e11A 266 4.36e+01 1korA 400 4.39e+01 c.26.2.1,d.210.1.1 72824,72825 1ay7B 89 4.40e+01 1ay7B c.9.1.1 30836 1bgvA 449 4.45e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1fhuA 320 4.48e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 2ccjA 205 4.49e+01 2cu6A 103 4.50e+01 d.52.8.2 130803 2fsaA 174 4.58e+01 2bo4A 397 4.61e+01 c.68.1.18 128869 1e2aA 105 4.61e+01 1e2aA a.7.2.1 16322 2o28A 184 4.62e+01 2e2aA 105 4.66e+01 a.7.2.1 88499 1wwzA 159 4.69e+01 d.108.1.1 121380 2qecA 204 4.71e+01 2zbxA 412 4.79e+01 2d5xB 146 4.80e+01 a.1.1.2 131283 2ecuA 149 4.82e+01 1d2vC 466 4.84e+01 1mhlC 1u32A 293 4.86e+01 d.159.1.3 107631 1oqkA 97 4.88e+01 b.137.1.1 93419 2i9wA 184 4.91e+01 1kb9D 246 4.93e+01 a.3.1.3,f.23.11.1 77317,77318 1lfkA 398 4.93e+01 a.104.1.1 77926 2ri7A 174 5.02e+01 2madH 373 5.06e+01 2bbkH b.69.2.1 27639 2f5gA 133 5.07e+01 d.58.57.1 132991 2o5aA 125 5.07e+01 2ywnA 157 5.08e+01 2genA 197 5.13e+01 a.4.1.9,a.121.1.1 135062,135063 2pftA 571 5.15e+01 2r8jA 554 5.16e+01 2hbvA 334 5.24e+01 c.1.9.15 136320 1vknA 351 5.24e+01 c.2.1.3,d.81.1.1 108676,108677 1zthA 258 5.25e+01 8rucI 123 5.32e+01 1rboC d.73.1.1 39629 2dd7A 216 5.43e+01 1bueA 265 5.44e+01 1btl e.3.1.1 42727 1a58A 177 5.62e+01 b.62.1.1 27495 1jk7A 323 5.65e+01 1auiA d.159.1.3 63144 2faoA 309 5.68e+01 2ealA 148 5.68e+01 2q4uA 272 5.76e+01 1tl9A 339 5.80e+01 d.3.1.3 112505 1aisA 182 5.81e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1lt8A 406 5.82e+01 c.1.26.1 78186 1wcv1 257 5.86e+01 2uubP 88 5.91e+01 d.27.1.1 139947 1rj9A 304 5.94e+01 a.24.13.1,c.37.1.10 97553,97554 1xx6A 191 5.95e+01 c.37.1.24,g.39.1.14 116139,116140 1tuzA 118 5.98e+01 a.39.1.7 112670 2ahdA 165 5.98e+01 d.159.1.7 126752 2bk9A 153 6.02e+01 1b9hA 388 6.09e+01 1b9hA c.67.1.4 34488 2fr7A 412 6.09e+01 1w6nA 134 6.16e+01 b.29.1.3 114275 2ckfB 174 6.18e+01 2gaiA 633 6.18e+01 1l1jA 239 6.22e+01 b.47.1.1 84516 1mbaA 146 6.27e+01 a.1.1.2 15149 1cg2A 393 6.30e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1dgnA 89 6.31e+01 1dgnA a.77.1.3 18436 2cjaA 522 6.34e+01 1obdA 306 6.36e+01 d.143.1.1 86767 3b89A 252 6.39e+01 2r55A 231 6.40e+01 1mba 147 6.43e+01 2fal 1v7rA 186 6.43e+01 c.51.4.1 100482 3c8wA 255 6.50e+01 2aioA 269 6.51e+01 d.157.1.1 126829 1i3dA 146 6.54e+01 a.1.1.2 61587 1tn3A 137 6.59e+01 d.169.1.1 42423 1vkmA 297 6.62e+01 c.138.1.1 108670 2gzmA 267 6.67e+01 1zxiC 288 6.68e+01 d.87.2.1,d.145.1.3 125776,125777 1uzeA 589 6.70e+01 d.92.1.5 108174 2j07A 420 6.72e+01 a.99.1.1,c.28.1.1 137891,137892 2ft0A 235 6.73e+01 1sk7A 198 6.79e+01 a.132.1.2 105671 2zd1A 557 6.79e+01 2j3xA 431 6.80e+01 1txkA 498 6.89e+01 b.1.18.2,b.30.5.9 107425,107426 1g0uL 241 6.96e+01 d.153.1.4 41894 1v6fA 151 6.96e+01 d.109.1.2 108395 2f2fC 186 6.98e+01 b.42.2.1 132812 1fjmA 330 7.01e+01 1auiA d.159.1.3 42082 2dc0A 434 7.09e+01 1q1cA 280 7.11e+01 d.26.1.1,d.26.1.1 104474,104475 1n62C 288 7.14e+01 d.87.2.1,d.145.1.3 80094,80095 2qfjA 216 7.16e+01 1t3qA 168 7.22e+01 a.56.1.1,d.15.4.2 106367,106368 1wstA 417 7.24e+01 c.67.1.1 121244 1a9wE 146 7.25e+01 1cg5B a.1.1.2 15551 1u2fA 90 7.27e+01 1u2fA d.58.7.1 39168 1p5jA 372 7.27e+01 c.79.1.1 104067 2ah6A 208 7.30e+01 1f6dA 376 7.30e+01 1f6dA c.87.1.3 35467 1hgxA 183 7.33e+01 1tc1A c.61.1.1 34027 2vi7A 177 7.37e+01 1rthA 560 7.37e+01 1rthA c.55.3.1,e.8.1.2 33576,43028 2v94A 107 7.37e+01 1fxjA 331 7.37e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 2yvuA 186 7.39e+01 2z10A 194 7.41e+01 3bn1A 373 7.47e+01 1nf1A 333 7.49e+01 1nf1A a.116.1.2 19110 1elrA 131 7.50e+01 1a17 a.118.8.1 19209 1vrtA 560 7.52e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 2dpxA 174 7.52e+01 3c2iA 97 7.52e+01 2qhpA 296 7.60e+01 1a5zA 319 7.67e+01 c.2.1.5,d.162.1.1 30181,42148 1ezwA 349 7.75e+01 1ezwA c.1.16.3 29558 1wjtA 103 7.77e+01 a.48.3.1 114711 1lnzA 342 7.81e+01 b.117.1.1,c.37.1.8 78112,78113 2feaA 236 7.82e+01 c.108.1.20 133327 1xwmA 217 7.87e+01 a.7.12.1 116132 1d5tA 433 7.89e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 2v7kA 361 7.94e+01 1hy5A 136 7.96e+01 a.24.11.1 65955 1obpA 159 7.99e+01 1obpA b.60.1.1 27092