# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ocvA 125 1.19e-13 d.17.4.3 86810 1ohpA 125 2.21e-13 d.17.4.3 118702 1opy 131 4.87e-13 1opy 1oh0A 131 6.05e-13 d.17.4.3 87004 1dmmA 131 6.24e-13 1opy d.17.4.3 38114 1s5aA 150 2.07e-12 d.17.4.10 98525 2bngA 149 2.66e-12 1nwwA 149 7.10e-12 d.17.4.8 86306 2a15A 139 1.28e-11 d.17.4.3 125973 2geyA 158 2.19e-11 1tuhA 156 4.34e-11 d.17.4.11 107345 2imjA 166 3.93e-10 1sjwA 144 4.65e-09 d.17.4.9 98899 2ux0A 143 6.06e-08 2gxfA 142 9.99e-08 3b7cA 122 4.38e-07 2chcA 170 8.31e-07 1hkxA 147 1.40e-06 d.17.4.7 83567 1m98A 317 2.52e-06 a.175.1.1,d.17.4.6 78866,78867 3cu3A 172 6.14e-06 3cnxA 170 2.80e-05 2owpA 129 9.14e-05 2rgqA 144 1.13e-04 2rfrA 155 1.53e-04 1tp6A 128 1.80e-04 d.17.4.12 107184 1zo2A 129 5.96e-04 2f86B 143 1.52e-03 3blzA 128 1.14e-02 3bb9A 148 1.25e-02 2r4iA 123 1.27e-02 1ounA 127 1.61e-02 1ounA d.17.4.2 38090 1gy6A 127 1.74e-02 d.17.4.2 70736 2qiyA 154 4.76e-02 1zx2A 147 1.04e-01 1ucdA 190 3.75e-01 d.124.1.1 107767 1o5uA 101 6.17e-01 b.82.1.8 92518 1jkgA 140 1.01e+00 d.17.4.2 66795 1hgxA 183 1.62e+00 1tc1A c.61.1.1 34027 1gy7A 125 2.62e+00 d.17.4.2 70738 1idpA 172 2.63e+00 d.17.4.1 83685 2qh5A 308 2.71e+00 1wurA 220 2.97e+00 d.96.1.1 121309 2madH 373 3.29e+00 2bbkH b.69.2.1 27639 2iqhA 499 3.70e+00 1yr0A 175 3.70e+00 d.108.1.1 123905 1l1zA 274 3.77e+00 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1r2zA 274 3.85e+00 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2nlvA 112 3.91e+00 d.326.1.1 138362 1htwA 158 3.93e+00 c.37.1.18 71083 1gybA 125 4.35e+00 d.17.4.2 70744 1vh5A 148 4.46e+00 d.38.1.5 100642 2dxqA 150 4.57e+00 2novA 496 4.63e+00 1qo8A 566 4.83e+00 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1uliB 187 4.89e+00 d.17.4.4 107923 3cswA 285 5.16e+00 2ywrA 216 5.17e+00 1x8gA 227 5.98e+00 d.157.1.1 114960 1x2gA 337 6.27e+00 1si6X 282 6.63e+00 d.151.1.2 118968 2r78A 117 7.16e+00 2i2xB 258 7.35e+00 1pk6C 129 7.65e+00 b.22.1.1 94803 2jg9C 131 7.66e+00 1hl9A 449 7.70e+00 b.71.1.3,c.1.8.11 90650,90651 1f0kA 364 7.77e+00 1f0kA c.87.1.2 35465 1ym5A 300 7.83e+00 1qysA 106 7.98e+00 k.41.1.1 96603 2z10A 194 8.09e+00 1fxjA 331 8.17e+00 1fwyA b.81.1.4,c.68.1.5 28062,34520 2nwvA 114 8.38e+00 d.326.1.1 138720 2imqX 282 8.41e+00 1tn3A 137 8.69e+00 d.169.1.1 42423 2gcxA 75 8.90e+00 1std 172 8.96e+00 3stdA 1jqgA 433 9.66e+00 c.56.5.1,d.58.3.1 71791,71792 2cb4A 291 1.02e+01 1b5qA 472 1.08e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 2e57A 637 1.09e+01 2f69A 261 1.09e+01 b.76.2.1,b.85.7.1 133035,133036 2gbwB 174 1.13e+01 3stdA 165 1.14e+01 3stdA d.17.4.1 38073 2dwcA 433 1.14e+01 2c30A 321 1.14e+01 1vhsA 175 1.15e+01 d.108.1.1 100698 1x8hA 228 1.17e+01 d.157.1.1 114961 1q42A 201 1.17e+01 d.17.4.2 95776 2yweA 600 1.20e+01 1p7gA 222 1.22e+01 a.2.11.1,d.44.1.1 94223,94224 1t3qB 788 1.24e+01 d.41.1.1,d.133.1.1 106369,106370 2qhqA 125 1.33e+01 1zhhB 242 1.35e+01 1wl8A 189 1.41e+01 c.23.16.1 120997 1lurA 339 1.41e+01 b.30.5.4 84717 2gv8A 447 1.44e+01 c.3.1.5,c.3.1.5 135759,135760 1tu1A 148 1.46e+01 d.107.1.3 107316 2v6oA 596 1.51e+01 2axoA 270 1.53e+01 c.47.1.19 127496 1n6aA 259 1.62e+01 b.76.2.1,b.85.7.1 80121,80122 2nvmA 126 1.63e+01 d.326.1.1 138631 2hjeA 221 1.74e+01 1rztA 331 1.76e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2gojA 197 1.81e+01 2o28A 184 1.87e+01 2i9sA 97 1.91e+01 1yycA 174 1.92e+01 1u14A 172 1.96e+01 c.51.4.3 107579 1q60A 99 1.97e+01 d.288.1.1 111654 1zxiC 288 2.02e+01 d.87.2.1,d.145.1.3 125776,125777 2qdsA 227 2.03e+01 1tuzA 118 2.04e+01 a.39.1.7 112670 2f57A 317 2.07e+01 1yq2A 1024 2.11e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1wgvA 124 2.12e+01 b.15.1.4 114624 1z90A 469 2.13e+01 b.81.1.4,c.68.1.5 124732,124733 1vqwA 457 2.26e+01 c.3.1.5,c.3.1.5 114028,114029 1t5bA 201 2.29e+01 c.23.5.3 106433 1n62C 288 2.31e+01 d.87.2.1,d.145.1.3 80094,80095 2esrA 177 2.34e+01 c.66.1.46 132344 2ckfB 174 2.34e+01 1t6jA 714 2.38e+01 a.127.1.2 112259 1h6qA 168 2.41e+01 1h6qA b.88.1.2 60692 1qgxA 357 2.43e+01 1qgxA e.7.1.1 42973 2h36X 112 2.46e+01 2inpC 328 2.46e+01 1ka1A 357 2.47e+01 e.7.1.1 68369 2awpA 198 2.49e+01 1o0wA 252 2.58e+01 a.149.1.1,d.50.1.1 80751,80752 1js1X 324 2.59e+01 c.78.1.1,c.78.1.1 71834,71835 2dd7A 216 2.63e+01 1mwpA 96 2.67e+01 1mwpA d.170.2.1 42453 2ealA 148 2.69e+01 1x3zA 335 2.69e+01 d.3.1.4 121673 1v7rA 186 2.72e+01 c.51.4.1 100482 2dpxA 174 2.73e+01 1uzxA 169 2.75e+01 d.20.1.2 100238 2jgqA 233 2.78e+01 2gjsA 176 2.82e+01 c.37.1.8 135287 2bo9A 308 2.82e+01 c.56.5.1 128897 1iscA 192 2.84e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 2fclA 169 2.84e+01 d.218.1.11 133273 1chuA 540 2.87e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2ccjA 205 2.91e+01 1dcqA 278 2.91e+01 1dcqA d.211.1.1,g.45.1.1 19178,45326 1fjgP 88 3.06e+01 1emwA d.27.1.1 38444 1wdjA 187 3.08e+01 c.52.1.27 114536 1qq9A 284 3.09e+01 1xjo c.56.5.4 33841 2vptA 215 3.13e+01 2icyA 469 3.21e+01 b.81.1.4,c.68.1.5 137257,137258 2ewrA 170 3.24e+01 d.218.1.11 132493 1svdM 110 3.32e+01 d.73.1.1 119059 2z26A 347 3.33e+01 2gd9A 189 3.38e+01 2nybA 192 3.47e+01 a.2.11.1,d.44.1.1 138804,138805 1elqA 390 3.47e+01 1elqA c.67.1.3 34436 1eluA 390 3.47e+01 1elqA c.67.1.3 34434 2hzmB 317 3.49e+01 2b71A 196 3.49e+01 b.62.1.1 128004 1wy7A 207 3.67e+01 c.66.1.32 121433 1r2jA 366 3.70e+01 a.29.3.1,e.6.1.1 96869,96870 1iq6A 134 3.71e+01 d.38.1.4 76755 1xjo 284 3.72e+01 1xjo 1mdaH 368 3.72e+01 2bbkH b.69.2.1 27637 2jbrA 422 3.91e+01 1tkjA 284 3.93e+01 c.56.5.4 119296 2vqeP 88 3.94e+01 2bekA 257 3.94e+01 2ownA 262 3.94e+01 1n57A 291 3.97e+01 c.23.16.2 85328 1kewA 361 3.98e+01 c.2.1.2 68544 2uubP 88 4.06e+01 d.27.1.1 139947 1h70A 255 4.09e+01 1h70A d.126.1.3 60711 2ch0A 133 4.33e+01 1oj5A 132 4.34e+01 d.110.3.8 93087 1mngA 203 4.38e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1xg4A 295 4.43e+01 2f9lA 199 4.45e+01 c.37.1.8 133166 2h5eA 529 4.49e+01 2zaiA 497 4.62e+01 1qp8A 303 4.66e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1no1A 126 4.70e+01 a.179.1.1 85913 2i9wA 184 4.80e+01 2eg6A 347 4.80e+01 2osoA 163 4.81e+01 1korA 400 4.88e+01 c.26.2.1,d.210.1.1 72824,72825 2avkA 136 4.93e+01 1xrtA 467 4.93e+01 b.92.1.3,c.1.9.6 122258,122259 1mumA 295 4.95e+01 c.1.12.7 85108 1j79A 347 4.97e+01 1j79A c.1.9.4 62675 1ixlA 131 5.18e+01 d.38.1.5 90717 2jbhA 225 5.26e+01 1omzA 293 5.28e+01 c.68.1.15 87093 2z98A 200 5.32e+01 1qtnA 164 5.34e+01 1pauA c.17.1.1 30999 1oz2A 331 5.40e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1scfA 273 5.41e+01 1exzA a.26.1.2 16873 1t82A 155 5.43e+01 d.38.1.5 106639 2bmoB 194 5.45e+01 d.17.4.4 128806 1d7yA 408 5.47e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1qauA 112 5.53e+01 1qauA b.36.1.1 24779 1cr1A 296 5.54e+01 1cr1A c.37.1.11 32286 1gqeA 365 5.55e+01 e.38.1.1 70351 2bkyA 97 5.58e+01 d.68.6.1 128715 1v7pC 200 5.61e+01 c.62.1.1 108408 2bjhA 260 5.64e+01 1e5dA 402 5.65e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1rsgA 516 5.68e+01 1n9lA 109 5.72e+01 d.110.3.6 85468 2am1A 454 5.83e+01 1pgvA 197 5.84e+01 c.10.1.1 88073 1dfoA 417 5.88e+01 1bj4A c.67.1.4 34480 2ifsA 169 5.89e+01 2qecA 204 5.90e+01 1ci0A 228 5.91e+01 1ci0A b.45.1.1 25750 2hf9A 226 5.93e+01 1u0sY 118 5.96e+01 c.23.1.1 107566 1z5zA 271 5.96e+01 c.37.1.19 124499 1nszA 347 6.04e+01 b.30.5.4 80724 1u1iA 392 6.06e+01 c.2.1.3,d.81.1.3 107582,107583 2c2aA 258 6.16e+01 a.30.2.1,d.122.1.3 129662,129663 1bykA 255 6.16e+01 1bykA c.93.1.1 35706 2i6jA 161 6.17e+01 1d5tA 433 6.22e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 3b2nA 133 6.22e+01 2va8A 715 6.25e+01 1tmyA 120 6.26e+01 c.23.1.1 31083 2r55A 231 6.35e+01 2ijqA 161 6.39e+01 a.246.2.1 137481 2glfA 450 6.39e+01 2yx0A 342 6.43e+01 2j6vA 301 6.55e+01 1veaA 148 6.60e+01 d.275.1.1 108529 2ov9A 216 6.66e+01 1vdwA 254 6.68e+01 e.7.1.1 100569 2yvsA 219 6.70e+01 1uwcA 261 6.72e+01 c.69.1.17 100101 3b89A 252 6.74e+01 1vr3A 191 6.74e+01 b.82.1.6 120431 1e4mM 501 6.81e+01 1e70M c.1.8.4 59226 1s8nA 205 6.91e+01 c.23.1.1 105374 1r7mA 235 6.97e+01 d.95.2.1,d.95.2.1 111713,111714 1e85A 127 6.97e+01 1bbhA a.24.3.2 16549 1h0xA 100 7.05e+01 d.68.6.1 76451 3cpkA 150 7.13e+01 1m3iA 471 7.15e+01 f.9.1.1 91178 2v0uA 146 7.21e+01 1qciA 262 7.23e+01 1qi7A d.165.1.1 42201 1jb7B 260 7.28e+01 1otcB b.40.4.3 62839 2vi7A 177 7.28e+01 2pd8A 149 7.29e+01 2oocA 113 7.31e+01 1udxA 416 7.32e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1ejbA 168 7.37e+01 1rvv1 c.16.1.1 59417 1vk3A 615 7.38e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1fsz 372 7.40e+01 1fsz 2gj3A 120 7.42e+01 1rtqA 299 7.45e+01 c.56.5.4 97819 1zatA 250 7.47e+01 b.160.1.1,d.335.1.1 124845,124846 1ei1A 391 7.55e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1vzoA 355 7.59e+01 d.144.1.7 108971 1b9hA 388 7.62e+01 1b9hA c.67.1.4 34488 2hd5A 359 7.76e+01 1m1hA 248 7.76e+01 b.114.1.1,d.58.42.1 78415,78416 1bavA 309 7.82e+01 1aye c.56.5.1 33806 1ayl 541 7.86e+01 1ayl 2hlcA 230 7.87e+01 5ptp b.47.1.2 26074 1feuA 206 7.93e+01 1feuA b.53.1.1 59801