# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oh0A 131 9.00e-12 d.17.4.3 87004 1dmmA 131 1.32e-11 1opy d.17.4.3 38114 1ocvA 125 1.56e-11 d.17.4.3 86810 1opy 131 1.79e-11 1opy 1ohpA 125 2.19e-11 d.17.4.3 118702 2bngA 149 2.27e-10 1s5aA 150 4.11e-10 d.17.4.10 98525 1nwwA 149 4.37e-10 d.17.4.8 86306 2a15A 139 6.99e-10 d.17.4.3 125973 1tuhA 156 8.10e-10 d.17.4.11 107345 2geyA 158 1.16e-09 2imjA 166 7.28e-09 1sjwA 144 3.45e-08 d.17.4.9 98899 2ux0A 143 6.70e-06 1hkxA 147 7.14e-06 d.17.4.7 83567 2gxfA 142 8.91e-06 3cu3A 172 8.99e-06 2chcA 170 2.25e-05 3b7cA 122 2.32e-05 1m98A 317 4.62e-05 a.175.1.1,d.17.4.6 78866,78867 3cnxA 170 1.05e-04 2rfrA 155 5.45e-04 2rgqA 144 6.04e-04 1zo2A 129 6.30e-03 2f86B 143 2.47e-02 1tp6A 128 3.80e-02 d.17.4.12 107184 2r4iA 123 7.70e-02 2owpA 129 9.51e-02 1ounA 127 1.27e-01 1ounA d.17.4.2 38090 1gy6A 127 1.42e-01 d.17.4.2 70736 3blzA 128 2.47e-01 3bb9A 148 2.83e-01 1zx2A 147 4.46e-01 2qiyA 154 8.46e-01 1yr0A 175 1.10e+00 d.108.1.1 123905 1idpA 172 1.31e+00 d.17.4.1 83685 2qdsA 227 1.75e+00 1x8gA 227 2.23e+00 d.157.1.1 114960 1hl9A 449 2.37e+00 b.71.1.3,c.1.8.11 90650,90651 1b5pA 385 2.86e+00 c.67.1.1 90403 1jkgA 140 3.38e+00 d.17.4.2 66795 1bjwA 382 3.59e+00 1bjwA c.67.1.1 34349 1x8hA 228 3.70e+00 d.157.1.1 114961 3stdA 165 4.20e+00 3stdA d.17.4.1 38073 1uliB 187 4.29e+00 d.17.4.4 107923 1r2zA 274 4.31e+00 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1std 172 4.73e+00 3stdA 1l1zA 274 4.82e+00 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1nrfA 262 5.27e+00 e.3.1.1 92086 2rdzA 452 7.17e+00 2novA 496 8.07e+00 2z61A 370 8.35e+00 1gybA 125 8.85e+00 d.17.4.2 70744 2awpA 198 8.97e+00 1dcqA 278 9.46e+00 1dcqA d.211.1.1,g.45.1.1 19178,45326 2o5aA 125 1.01e+01 1gy7A 125 1.04e+01 d.17.4.2 70738 2nvmA 126 1.06e+01 d.326.1.1 138631 2yx0A 342 1.16e+01 1wmuB 146 1.26e+01 a.1.1.2 109417 2nlvA 112 1.45e+01 d.326.1.1 138362 2inpC 328 1.57e+01 3pmgA 561 1.67e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3cswA 285 1.73e+01 2ecuA 149 1.82e+01 2hbvA 334 1.85e+01 c.1.9.15 136320 2ywrA 216 1.94e+01 1fgjA 546 2.07e+01 1fgjA a.138.1.3 19679 1qp8A 303 2.30e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1o5uA 101 2.31e+01 b.82.1.8 92518 2j3xA 431 2.37e+01 1qq9A 284 2.38e+01 1xjo c.56.5.4 33841 1tkjA 284 2.43e+01 c.56.5.4 119296 1zxmA 400 2.47e+01 2oocA 113 2.47e+01 1q7lA 198 2.52e+01 c.56.5.4 96044 1y44A 320 2.61e+01 d.157.1.7 122608 1xjo 284 2.67e+01 1xjo 1xszA 356 2.68e+01 a.118.3.1,d.129.9.1 116005,116006 1qb7A 236 2.69e+01 1qb7A c.61.1.1 34087 1tl9A 339 2.72e+01 d.3.1.3 112505 2p8tA 200 2.73e+01 1b04A 318 2.81e+01 1b04A d.142.2.2 41579 1hgxA 183 2.85e+01 1tc1A c.61.1.1 34027 2j3hA 345 2.86e+01 2gojA 197 2.91e+01 1ucdA 190 2.91e+01 d.124.1.1 107767 2d5xB 146 3.04e+01 a.1.1.2 131283 2ctc 307 3.10e+01 1aye 1m4lA 307 3.19e+01 c.56.5.1 78604 1bavA 309 3.39e+01 1aye c.56.5.1 33806 2gagA 965 3.45e+01 1t6cA 315 3.47e+01 c.55.1.8,c.55.1.8 106558,106559 2oiwA 136 3.48e+01 2pqmA 343 3.59e+01 1ei1A 391 3.62e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 2cxiA 348 3.85e+01 2hfsA 332 3.95e+01 2b78A 385 4.06e+01 b.122.1.9,c.66.1.51 128025,128026 2a0mA 316 4.08e+01 c.42.1.1 125960 2g8jA 339 4.12e+01 d.3.1.3 134773 2aioA 269 4.49e+01 d.157.1.1 126829 1smlA 269 4.53e+01 1smlA d.157.1.1 42053 1i0dA 332 4.56e+01 1pscA c.1.9.3 61487 1fm2A 169 4.72e+01 1fm2A d.153.1.2 59877 2bo9A 308 4.74e+01 c.56.5.1 128897 2ob3A 330 4.74e+01 1sv0A 85 4.80e+01 a.60.1.1 106035 1f89A 291 4.80e+01 d.160.1.1 64988 1aisA 182 4.85e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2q81A 119 4.91e+01 2dxqA 150 4.91e+01 1i3dA 146 5.02e+01 a.1.1.2 61587 1htwA 158 5.05e+01 c.37.1.18 71083 1o5zA 442 5.06e+01 c.59.1.2,c.72.2.2 92530,92531 1usyA 275 5.12e+01 d.104.1.1 113422 1g7nA 131 5.35e+01 b.60.1.2 83274 2fh7A 595 5.40e+01 2f4iA 197 5.41e+01 b.40.11.1 132923 2pziA 681 5.42e+01 1gvjA 146 5.47e+01 a.4.5.21 90525 1wcv1 257 5.50e+01 2fddA 100 5.51e+01 1rztA 331 5.72e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3ci0K 298 5.75e+01 2ozgA 396 5.77e+01 1fxjA 331 5.78e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1bueA 265 5.82e+01 1btl e.3.1.1 42727 2ywnA 157 5.84e+01 2qecA 204 5.89e+01 2qhqA 125 5.91e+01 2r2nA 425 6.04e+01 1hv9A 456 6.08e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 2obiA 183 6.13e+01 1wvhA 134 6.14e+01 b.55.1.2 121341 2d5vA 164 6.18e+01 3c86A 328 6.18e+01 2hqyA 305 6.23e+01 1fcdA 401 6.39e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2avnA 260 6.48e+01 c.66.1.41 127380 2ah6A 208 6.54e+01 2pi1A 334 6.55e+01 1zyeA 220 6.56e+01 c.47.1.10 125817 2d2jA 329 6.71e+01 c.1.9.3 131175 2gbwB 174 6.77e+01 2qv3A 457 6.86e+01 1vqwA 457 6.89e+01 c.3.1.5,c.3.1.5 114028,114029 1n0xL 215 7.02e+01 b.1.1.1,b.1.1.2 91532,91533 2q4nA 166 7.16e+01 b.60.1.8 139871 2phpA 192 7.16e+01 2cw9A 194 7.27e+01 d.17.4.13 130920 2gv8A 447 7.33e+01 c.3.1.5,c.3.1.5 135759,135760 1o9gA 250 7.35e+01 c.66.1.29 86692 1r8mE 203 7.48e+01 a.118.3.1 97242 1uoyA 64 7.52e+01 g.3.19.1 99709 2bh9A 489 7.53e+01 2gjsA 176 7.54e+01 c.37.1.8 135287 2a13A 166 7.55e+01 b.60.1.8 125971 1vp4A 425 7.56e+01 c.67.1.1 113935 2i2xB 258 7.61e+01 2pqxA 245 7.66e+01 1irdB 146 7.67e+01 a.1.1.2 66287 1ihoA 283 7.70e+01 1ihoA c.26.1.4 62390 1zthA 258 7.96e+01 2es4D 332 8.00e+01