# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1buqA 126 1.077e-11 1opy d.17.4.3 38111 2bngA 133 1.240e-06 1ohpA 126 1.285e-06 d.17.4.3 118702 1ocvA 126 1.432e-06 d.17.4.3 86810 3cu3A 163 1.013e-05 1nwwA 146 1.462e-05 d.17.4.8 86306 1tuhA 132 6.687e-05 d.17.4.11 107345 2geyA 158 8.043e-05 2a15A 134 1.220e-03 d.17.4.3 125973 1ea2A 124 1.275e-03 d.17.4.3 64860 1opy 124 2.052e-03 1opy 2chcA 170 4.289e-03 1s5aA 140 4.649e-03 d.17.4.10 98525 1oh0A 126 4.990e-03 d.17.4.3 87004 3b7cA 122 5.833e-03 1dmmA 124 5.946e-03 1opy d.17.4.3 38114 2ux0A 138 6.850e-03 1sjwA 143 5.029e-02 d.17.4.9 98899 2rfrA 155 9.957e-02 3bb9A 124 1.307e-01 2gxfA 120 2.632e-01 3cnxA 139 4.190e-01 2f86B 130 2.011e+00 1uliB 178 3.057e+00 d.17.4.4 107923 1qcrC 379 3.663e+00 1be3C f.32.1.1 75931 f.21.1.2 75932 2bmoB 195 3.831e+00 d.17.4.4 128806 1be3C 380 4.256e+00 1be3C f.32.1.1 75805 f.21.1.2 75806 2gfgA 192 4.291e+00 1psqA 164 4.649e+00 c.47.1.10 88283 2b1xB 168 4.860e+00 d.17.4.4 127677 1qxhA 165 5.133e+00 c.47.1.10 96528 1eg9B 194 5.329e+00 1ndoB d.17.4.4 38120 2ckfB 171 5.371e+00 1ndoB 194 5.783e+00 1ndoB d.17.4.4 38121 1kb9C 386 6.191e+00 f.32.1.1 77315 f.21.1.2 77316 1zxiC 288 6.482e+00 d.87.2.1 125776 d.145.1.3 125777 1bkrA 109 7.157e+00 1bkrA a.40.1.1 17394 2e74A 216 7.313e+00 f.21.1.2 132048 1n62C 287 9.006e+00 d.87.2.1 80094 d.145.1.3 80095 1t3qC 286 9.067e+00 d.87.2.1 106371 d.145.1.3 106372 2gbwB 171 1.031e+01 2r61A 196 1.050e+01 1vpdA 295 1.229e+01 a.100.1.1 113951 c.2.1.6 113952 1y32A 25 1.242e+01 1wuiL 535 1.263e+01 e.18.1.1 121289 1qcrD 76 1.300e+01 1qcrD a.3.1.3 15956 f.23.11.1 43674 1wj9A 189 1.331e+01 d.58.53.1 114694 d.58.53.1 114695 2yukA 91 1.383e+01 2bkdN 135 1.431e+01 2h3kA 145 1.478e+01 1zcdA 377 1.484e+01 1ym3A 194 1.612e+01 1rm6B 324 1.743e+01 d.87.2.1 111874 d.145.1.3 111875 1k5wA 149 1.783e+01 b.7.1.2 68212 1brvA 20 1.814e+01 j.33.1.1 46235 1q98A 165 2.165e+01 c.47.1.10 96253 1yceA 90 2.185e+01 1w3wA 312 2.333e+01 2chdA 129 2.405e+01 2eyuA 248 2.407e+01 1tjxA 157 2.408e+01 b.7.1.2 112465 1a91 80 2.415e+01 1a91 1ywmA 181 2.419e+01 1bhdA 109 2.577e+01 1bkrA a.40.1.1 17398 1o7nB 194 2.614e+01 d.17.4.4 81164 1ret 44 2.641e+01 1ret 2ppwA 211 2.859e+01 2b3rA 125 2.909e+01 1pbuA 163 2.939e+01 d.58.46.1 88030 1ylkA 164 2.960e+01 1ppjC 366 3.039e+01 f.32.1.1 104256 f.21.1.2 104257 1v54G 85 3.040e+01 f.23.2.1 100328 2b1kA 150 3.103e+01 1ekjA 211 3.200e+01 1ekjB c.53.2.1 33364 1wwzA 158 3.248e+01 d.108.1.1 121380 1ofzA 313 3.351e+01 b.68.8.1 86978 3c8lA 122 3.392e+01 2c1mB 47 3.444e+01 1qq2A 174 3.455e+01 1qq2A c.47.1.10 33064 1ii2A 523 3.528e+01 c.91.1.1 66146 c.109.1.1 66147 2d4pA 131 3.639e+01 1hkxA 141 3.660e+01 d.17.4.7 83567 2a5vA 211 3.840e+01