PFRMAT TS TARGET T0474 AUTHOR SAM-T06-server METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and METHOD the SAM-T02 method in CASP5. METHOD METHOD We start with a fully automated method: METHOD METHOD Use the SAM-T2K and SAM-T04 methods for finding homologs of the METHOD target and aligning them. METHOD METHOD Make local structure predictions using neural nets and the METHOD multiple alignments. Different neural nets are used for the METHOD SAM-T2K alignments and the SAM-T04 alignments. METHOD We currently use 8 local-structure alphabets: METHOD DSSP METHOD STRIDE METHOD STR2 an extended version of DSSP that splits the beta strands METHOD into multiple classes (parallel/antiparallel/mixed, METHOD edge/center) METHOD ALPHA an discretization of the alpha torsion angle: METHOD CA(i-i), CA(i), CA(i+1), CA(i+2) METHOD BYS a discretization of Ramachandran plots, due to Bystroff METHOD CB_burial_14_7 a 7-state discretization of the number of C_beta METHOD atoms in a 14 Angstrom radius sphere around the C_beta. METHOD near-backbone-11 an 11-state discretization of the number of METHOD residues (represented by near-backbone points) in a METHOD 9.65 Angstrom radius sphere around the sidechain proxy METHOD spot for the residue. METHOD DSSP_EHL2 CASP's collapse of the DSSP alphabet METHOD DSSP_EHL2 is not predicted directly by a METHOD neural net, but is computed as a weighted METHOD average of the other backbone alphabet predictions. METHOD METHOD We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure) METHOD and use them to score a template library of 6400 (t04) or 9900 (t2k) templates METHOD We also used a single-track HMM to score not just the template METHOD library, but a non-redundant copy of the entire PDB. METHOD METHOD We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and METHOD AA, str2, near-backbone-11) for finding and aligning more remote METHOD homologs. METHOD METHOD One-track HMMs built from the template library multiple alignments METHOD were used to score the target sequence (for early targets, only METHOD t2k template library was searched this way). METHOD METHOD All the logs of e-values were combined in a weighted average (with METHOD rather arbitrary weights, since we did not have time to METHOD optimize them), and the best templates ranked. Ranking was METHOD separate for predictions from the t2k and t04 multiple alignments. METHOD METHOD Alignments of the target to the top templates were made using METHOD several different alignment methods (mainly using the SAM hmmscore METHOD program, but a few alignments were made with Bob Edgar's MUSCLE METHOD profile-profile aligner). METHOD METHOD Generate fragments (short 9-residue alignments for each position) METHOD using SAM's "fragfinder" program and the 3-track HMM. METHOD METHOD Then the "undertaker" program (named because it optimizes burial) METHOD is used to try to combine the alignments and the fragments into METHOD a consistent 3D model. No single alignment or parent template METHOD was used, though in many cases one had much more influence than METHOD the others. The alignment scores were not passed to undertaker, METHOD but were used only to pick the set of alignments and fragments METHOD that undertaker would see. Helix and strand constraints METHOD generated from the secondary-structure predictions are passed to METHOD undertaker to use in the cost function. METHOD METHOD One important change in this server over previous methods is that METHOD sheet constraints are extracted from the top few alignments and METHOD passed to undertaker. REMARK 6 REMARK 6 T0474 model 5 Thu Jun 26 12:12:18 2008 MODEL 5 PARENT N/A ATOM 2 N ILE 12 -2.021 3.698 -2.409 1.00 0.00 ATOM 3 CA ILE 12 -0.673 4.199 -2.181 1.00 0.00 ATOM 4 CB ILE 12 -0.252 4.039 -0.708 1.00 0.00 ATOM 5 CG1 ILE 12 -1.120 4.918 0.192 1.00 0.00 ATOM 6 CG2 ILE 12 1.202 4.445 -0.522 1.00 0.00 ATOM 7 CD1 ILE 12 -0.923 4.660 1.671 1.00 0.00 ATOM 8 O ILE 12 0.303 2.228 -3.146 1.00 0.00 ATOM 9 C ILE 12 0.348 3.452 -3.032 1.00 0.00 ATOM 10 N LEU 13 1.291 4.196 -3.600 1.00 0.00 ATOM 11 CA LEU 13 2.346 3.604 -4.405 1.00 0.00 ATOM 12 CB LEU 13 2.645 4.479 -5.624 1.00 0.00 ATOM 13 CG LEU 13 1.490 4.698 -6.602 1.00 0.00 ATOM 14 CD1 LEU 13 1.902 5.644 -7.719 1.00 0.00 ATOM 15 CD2 LEU 13 1.060 3.380 -7.229 1.00 0.00 ATOM 16 O LEU 13 3.992 4.412 -2.864 1.00 0.00 ATOM 17 C LEU 13 3.609 3.474 -3.563 1.00 0.00 ATOM 18 N LEU 14 4.236 2.308 -3.608 1.00 0.00 ATOM 19 CA LEU 14 5.436 2.069 -2.817 1.00 0.00 ATOM 20 CB LEU 14 5.153 1.058 -1.706 1.00 0.00 ATOM 21 CG LEU 14 4.121 1.477 -0.655 1.00 0.00 ATOM 22 CD1 LEU 14 3.802 0.318 0.277 1.00 0.00 ATOM 23 CD2 LEU 14 4.647 2.630 0.185 1.00 0.00 ATOM 24 O LEU 14 6.368 0.654 -4.512 1.00 0.00 ATOM 25 C LEU 14 6.576 1.519 -3.663 1.00 0.00 ATOM 26 N ASP 15 7.786 2.008 -3.409 1.00 0.00 ATOM 27 CA ASP 15 8.953 1.542 -4.141 1.00 0.00 ATOM 28 CB ASP 15 9.912 2.703 -4.416 1.00 0.00 ATOM 29 CG ASP 15 11.113 2.283 -5.239 1.00 0.00 ATOM 30 OD1 ASP 15 11.235 1.077 -5.540 1.00 0.00 ATOM 31 OD2 ASP 15 11.933 3.160 -5.584 1.00 0.00 ATOM 32 O ASP 15 10.080 0.715 -2.187 1.00 0.00 ATOM 33 C ASP 15 9.692 0.483 -3.333 1.00 0.00 ATOM 34 N LEU 16 9.877 -0.679 -3.941 1.00 0.00 ATOM 35 CA LEU 16 10.564 -1.790 -3.291 1.00 0.00 ATOM 36 CB LEU 16 9.580 -2.918 -2.978 1.00 0.00 ATOM 37 CG LEU 16 8.432 -2.571 -2.028 1.00 0.00 ATOM 38 CD1 LEU 16 7.440 -3.721 -1.940 1.00 0.00 ATOM 39 CD2 LEU 16 8.957 -2.289 -0.628 1.00 0.00 ATOM 40 O LEU 16 11.665 -2.103 -5.400 1.00 0.00 ATOM 41 C LEU 16 11.659 -2.347 -4.194 1.00 0.00 ATOM 42 N SER 17 12.579 -3.108 -3.609 1.00 0.00 ATOM 43 CA SER 17 13.663 -3.705 -4.381 1.00 0.00 ATOM 44 CB SER 17 14.856 -4.018 -3.475 1.00 0.00 ATOM 45 OG SER 17 15.883 -4.679 -4.195 1.00 0.00 ATOM 46 O SER 17 12.425 -5.765 -4.451 1.00 0.00 ATOM 47 C SER 17 13.196 -5.003 -5.035 1.00 0.00 ATOM 48 N ASN 18 13.650 -5.227 -6.263 1.00 0.00 ATOM 49 CA ASN 18 13.273 -6.410 -7.039 1.00 0.00 ATOM 50 CB ASN 18 14.255 -6.629 -8.192 1.00 0.00 ATOM 51 CG ASN 18 14.079 -5.617 -9.307 1.00 0.00 ATOM 52 ND2 ASN 18 15.096 -5.486 -10.151 1.00 0.00 ATOM 53 OD1 ASN 18 13.041 -4.961 -9.406 1.00 0.00 ATOM 54 O ASN 18 12.235 -8.358 -6.093 1.00 0.00 ATOM 55 C ASN 18 13.263 -7.692 -6.206 1.00 0.00 ATOM 56 N GLU 19 14.415 -8.053 -5.657 1.00 0.00 ATOM 57 CA GLU 19 14.538 -9.280 -4.871 1.00 0.00 ATOM 58 CB GLU 19 15.963 -9.432 -4.332 1.00 0.00 ATOM 59 CG GLU 19 16.194 -10.707 -3.540 1.00 0.00 ATOM 60 CD GLU 19 17.623 -10.839 -3.051 1.00 0.00 ATOM 61 OE1 GLU 19 18.437 -9.938 -3.345 1.00 0.00 ATOM 62 OE2 GLU 19 17.930 -11.843 -2.374 1.00 0.00 ATOM 63 O GLU 19 12.898 -10.301 -3.448 1.00 0.00 ATOM 64 C GLU 19 13.593 -9.310 -3.669 1.00 0.00 ATOM 65 N VAL 20 13.577 -8.239 -2.885 1.00 0.00 ATOM 66 CA VAL 20 12.722 -8.178 -1.701 1.00 0.00 ATOM 67 CB VAL 20 12.975 -6.896 -0.887 1.00 0.00 ATOM 68 CG1 VAL 20 11.952 -6.762 0.230 1.00 0.00 ATOM 69 CG2 VAL 20 14.363 -6.926 -0.266 1.00 0.00 ATOM 70 O VAL 20 10.463 -8.963 -1.509 1.00 0.00 ATOM 71 C VAL 20 11.240 -8.192 -2.069 1.00 0.00 ATOM 72 N ILE 21 10.849 -7.336 -3.007 1.00 0.00 ATOM 73 CA ILE 21 9.453 -7.256 -3.435 1.00 0.00 ATOM 74 CB ILE 21 9.295 -6.362 -4.678 1.00 0.00 ATOM 75 CG1 ILE 21 7.817 -6.048 -4.924 1.00 0.00 ATOM 76 CG2 ILE 21 9.848 -7.061 -5.911 1.00 0.00 ATOM 77 CD1 ILE 21 7.588 -4.931 -5.919 1.00 0.00 ATOM 78 O ILE 21 7.719 -8.890 -3.627 1.00 0.00 ATOM 79 C ILE 21 8.903 -8.632 -3.787 1.00 0.00 ATOM 80 N LYS 22 9.771 -9.515 -4.263 1.00 0.00 ATOM 81 CA LYS 22 9.369 -10.860 -4.640 1.00 0.00 ATOM 82 CB LYS 22 10.490 -11.558 -5.412 1.00 0.00 ATOM 83 CG LYS 22 10.728 -10.995 -6.804 1.00 0.00 ATOM 84 CD LYS 22 11.857 -11.730 -7.509 1.00 0.00 ATOM 85 CE LYS 22 12.095 -11.167 -8.902 1.00 0.00 ATOM 86 NZ LYS 22 13.217 -11.858 -9.595 1.00 0.00 ATOM 87 O LYS 22 8.215 -12.595 -3.461 1.00 0.00 ATOM 88 C LYS 22 9.048 -11.690 -3.412 1.00 0.00 ATOM 89 N GLN 23 9.712 -11.382 -2.305 1.00 0.00 ATOM 90 CA GLN 23 9.486 -12.111 -1.072 1.00 0.00 ATOM 91 CB GLN 23 10.459 -11.644 0.013 1.00 0.00 ATOM 92 CG GLN 23 11.905 -12.044 -0.237 1.00 0.00 ATOM 93 CD GLN 23 12.859 -11.442 0.776 1.00 0.00 ATOM 94 OE1 GLN 23 12.461 -10.631 1.613 1.00 0.00 ATOM 95 NE2 GLN 23 14.125 -11.835 0.702 1.00 0.00 ATOM 96 O GLN 23 7.348 -12.836 -0.262 1.00 0.00 ATOM 97 C GLN 23 8.064 -11.885 -0.574 1.00 0.00 ATOM 98 N LEU 24 7.656 -10.620 -0.511 1.00 0.00 ATOM 99 CA LEU 24 6.314 -10.273 -0.061 1.00 0.00 ATOM 100 CB LEU 24 6.272 -8.824 0.431 1.00 0.00 ATOM 101 CG LEU 24 7.089 -8.509 1.685 1.00 0.00 ATOM 102 CD1 LEU 24 7.063 -7.019 1.984 1.00 0.00 ATOM 103 CD2 LEU 24 6.528 -9.246 2.891 1.00 0.00 ATOM 104 O LEU 24 4.168 -10.858 -0.957 1.00 0.00 ATOM 105 C LEU 24 5.296 -10.419 -1.187 1.00 0.00 ATOM 106 N ASP 25 5.691 -10.054 -2.406 1.00 0.00 ATOM 107 CA ASP 25 4.791 -10.158 -3.552 1.00 0.00 ATOM 108 CB ASP 25 5.481 -9.657 -4.823 1.00 0.00 ATOM 109 CG ASP 25 4.515 -9.473 -5.976 1.00 0.00 ATOM 110 OD1 ASP 25 3.292 -9.591 -5.751 1.00 0.00 ATOM 111 OD2 ASP 25 4.980 -9.209 -7.105 1.00 0.00 ATOM 112 O ASP 25 3.192 -11.920 -3.891 1.00 0.00 ATOM 113 C ASP 25 4.376 -11.612 -3.763 1.00 0.00 ATOM 114 N ASP 26 5.364 -12.500 -3.792 1.00 0.00 ATOM 115 CA ASP 26 5.116 -13.925 -3.982 1.00 0.00 ATOM 116 CB ASP 26 6.435 -14.697 -4.024 1.00 0.00 ATOM 117 CG ASP 26 7.203 -14.469 -5.312 1.00 0.00 ATOM 118 OD1 ASP 26 6.617 -13.910 -6.262 1.00 0.00 ATOM 119 OD2 ASP 26 8.392 -14.849 -5.370 1.00 0.00 ATOM 120 O ASP 26 3.382 -15.317 -3.083 1.00 0.00 ATOM 121 C ASP 26 4.271 -14.500 -2.850 1.00 0.00 ATOM 122 N LEU 27 4.554 -14.072 -1.621 1.00 0.00 ATOM 123 CA LEU 27 3.816 -14.554 -0.459 1.00 0.00 ATOM 124 CB LEU 27 4.320 -13.873 0.816 1.00 0.00 ATOM 125 CG LEU 27 3.714 -14.365 2.131 1.00 0.00 ATOM 126 CD1 LEU 27 4.004 -15.843 2.337 1.00 0.00 ATOM 127 CD2 LEU 27 4.292 -13.597 3.310 1.00 0.00 ATOM 128 O LEU 27 1.486 -15.038 -0.156 1.00 0.00 ATOM 129 C LEU 27 2.328 -14.259 -0.600 1.00 0.00 ATOM 130 N GLU 28 2.013 -13.132 -1.227 1.00 0.00 ATOM 131 CA GLU 28 0.628 -12.742 -1.434 1.00 0.00 ATOM 132 CB GLU 28 0.553 -11.428 -2.214 1.00 0.00 ATOM 133 CG GLU 28 1.083 -10.224 -1.453 1.00 0.00 ATOM 134 CD GLU 28 2.597 -10.134 -1.486 1.00 0.00 ATOM 135 OE1 GLU 28 3.227 -10.981 -2.153 1.00 0.00 ATOM 136 OE2 GLU 28 3.152 -9.219 -0.843 1.00 0.00 ATOM 137 O GLU 28 -1.192 -14.264 -1.812 1.00 0.00 ATOM 138 C GLU 28 -0.124 -13.809 -2.221 1.00 0.00 ATOM 139 N VAL 29 0.449 -14.205 -3.355 1.00 0.00 ATOM 140 CA VAL 29 -0.150 -15.219 -4.205 1.00 0.00 ATOM 141 CB VAL 29 0.550 -15.292 -5.575 1.00 0.00 ATOM 142 CG1 VAL 29 0.029 -16.476 -6.376 1.00 0.00 ATOM 143 CG2 VAL 29 0.295 -14.023 -6.372 1.00 0.00 ATOM 144 O VAL 29 -0.944 -17.420 -3.686 1.00 0.00 ATOM 145 C VAL 29 -0.048 -16.585 -3.554 1.00 0.00 ATOM 146 N GLN 30 1.053 -16.806 -2.844 1.00 0.00 ATOM 147 CA GLN 30 1.273 -18.069 -2.163 1.00 0.00 ATOM 148 CB GLN 30 2.612 -18.052 -1.423 1.00 0.00 ATOM 149 CG GLN 30 3.828 -18.082 -2.336 1.00 0.00 ATOM 150 CD GLN 30 5.131 -17.950 -1.576 1.00 0.00 ATOM 151 OE1 GLN 30 5.134 -17.744 -0.362 1.00 0.00 ATOM 152 NE2 GLN 30 6.246 -18.068 -2.288 1.00 0.00 ATOM 153 O GLN 30 -0.272 -19.455 -0.954 1.00 0.00 ATOM 154 C GLN 30 0.162 -18.321 -1.153 1.00 0.00 ATOM 155 N ARG 31 -0.295 -17.246 -0.525 1.00 0.00 ATOM 156 CA ARG 31 -1.360 -17.323 0.463 1.00 0.00 ATOM 157 CB ARG 31 -1.396 -16.049 1.310 1.00 0.00 ATOM 158 CG ARG 31 -2.406 -16.090 2.446 1.00 0.00 ATOM 159 CD ARG 31 -2.292 -14.859 3.331 1.00 0.00 ATOM 160 NE ARG 31 -3.222 -14.905 4.456 1.00 0.00 ATOM 161 CZ ARG 31 -3.412 -13.905 5.310 1.00 0.00 ATOM 162 NH1 ARG 31 -4.279 -14.037 6.304 1.00 0.00 ATOM 163 NH2 ARG 31 -2.734 -12.773 5.168 1.00 0.00 ATOM 164 O ARG 31 -3.645 -18.057 0.362 1.00 0.00 ATOM 165 C ARG 31 -2.719 -17.486 -0.214 1.00 0.00 ATOM 166 N ASN 32 -2.829 -16.990 -1.445 1.00 0.00 ATOM 167 CA ASN 32 -4.078 -17.099 -2.182 1.00 0.00 ATOM 168 CB ASN 32 -5.110 -17.887 -1.374 1.00 0.00 ATOM 169 CG ASN 32 -4.769 -19.360 -1.267 1.00 0.00 ATOM 170 ND2 ASN 32 -5.294 -20.016 -0.241 1.00 0.00 ATOM 171 OD1 ASN 32 -4.040 -19.899 -2.101 1.00 0.00 ATOM 172 O ASN 32 -5.917 -15.628 -2.595 1.00 0.00 ATOM 173 C ASN 32 -4.694 -15.751 -2.504 1.00 0.00 ATOM 174 N LEU 33 -3.854 -14.737 -2.675 1.00 0.00 ATOM 175 CA LEU 33 -4.333 -13.394 -2.986 1.00 0.00 ATOM 176 CB LEU 33 -4.823 -12.692 -1.718 1.00 0.00 ATOM 177 CG LEU 33 -3.808 -12.558 -0.581 1.00 0.00 ATOM 178 CD1 LEU 33 -2.894 -11.365 -0.815 1.00 0.00 ATOM 179 CD2 LEU 33 -4.514 -12.363 0.751 1.00 0.00 ATOM 180 O LEU 33 -2.117 -13.029 -3.836 1.00 0.00 ATOM 181 C LEU 33 -3.223 -12.545 -3.601 1.00 0.00 ATOM 182 N PRO 34 -3.521 -11.274 -3.848 1.00 0.00 ATOM 183 CA PRO 34 -2.541 -10.356 -4.418 1.00 0.00 ATOM 184 CB PRO 34 -3.368 -9.461 -5.345 1.00 0.00 ATOM 185 CG PRO 34 -4.701 -9.368 -4.682 1.00 0.00 ATOM 186 CD PRO 34 -4.911 -10.681 -3.981 1.00 0.00 ATOM 187 O PRO 34 -2.501 -9.249 -2.293 1.00 0.00 ATOM 188 C PRO 34 -1.871 -9.557 -3.306 1.00 0.00 ATOM 189 N ARG 35 -0.591 -9.239 -3.475 1.00 0.00 ATOM 190 CA ARG 35 0.135 -8.494 -2.452 1.00 0.00 ATOM 191 CB ARG 35 1.537 -8.133 -2.947 1.00 0.00 ATOM 192 CG ARG 35 1.552 -7.127 -4.088 1.00 0.00 ATOM 193 CD ARG 35 2.966 -6.881 -4.587 1.00 0.00 ATOM 194 NE ARG 35 2.990 -5.981 -5.739 1.00 0.00 ATOM 195 CZ ARG 35 2.628 -6.334 -6.968 1.00 0.00 ATOM 196 NH1 ARG 35 2.683 -5.448 -7.954 1.00 0.00 ATOM 197 NH2 ARG 35 2.211 -7.568 -7.208 1.00 0.00 ATOM 198 O ARG 35 -0.445 -6.699 -0.977 1.00 0.00 ATOM 199 C ARG 35 -0.585 -7.202 -2.091 1.00 0.00 ATOM 200 N ALA 36 -1.388 -6.682 -3.015 1.00 0.00 ATOM 201 CA ALA 36 -2.150 -5.466 -2.742 1.00 0.00 ATOM 202 CB ALA 36 -2.978 -5.075 -3.957 1.00 0.00 ATOM 203 O ALA 36 -3.613 -4.763 -0.967 1.00 0.00 ATOM 204 C ALA 36 -3.088 -5.704 -1.557 1.00 0.00 ATOM 205 N ASP 37 -3.277 -6.981 -1.217 1.00 0.00 ATOM 206 CA ASP 37 -4.124 -7.376 -0.102 1.00 0.00 ATOM 207 CB ASP 37 -5.053 -8.520 -0.513 1.00 0.00 ATOM 208 CG ASP 37 -6.127 -8.076 -1.488 1.00 0.00 ATOM 209 OD1 ASP 37 -6.331 -6.853 -1.630 1.00 0.00 ATOM 210 OD2 ASP 37 -6.763 -8.954 -2.110 1.00 0.00 ATOM 211 O ASP 37 -3.446 -7.415 2.204 1.00 0.00 ATOM 212 C ASP 37 -3.264 -7.840 1.063 1.00 0.00 ATOM 213 N LEU 38 -2.337 -8.736 0.751 1.00 0.00 ATOM 214 CA LEU 38 -1.443 -9.303 1.746 1.00 0.00 ATOM 215 CB LEU 38 -0.562 -10.385 1.120 1.00 0.00 ATOM 216 CG LEU 38 0.446 -11.062 2.051 1.00 0.00 ATOM 217 CD1 LEU 38 -0.268 -11.781 3.185 1.00 0.00 ATOM 218 CD2 LEU 38 1.280 -12.082 1.292 1.00 0.00 ATOM 219 O LEU 38 -0.442 -8.098 3.564 1.00 0.00 ATOM 220 C LEU 38 -0.524 -8.241 2.345 1.00 0.00 ATOM 221 N LEU 39 0.150 -7.487 1.485 1.00 0.00 ATOM 222 CA LEU 39 1.042 -6.431 1.945 1.00 0.00 ATOM 223 CB LEU 39 1.800 -5.817 0.766 1.00 0.00 ATOM 224 CG LEU 39 2.874 -4.786 1.114 1.00 0.00 ATOM 225 CD1 LEU 39 3.946 -5.406 1.999 1.00 0.00 ATOM 226 CD2 LEU 39 3.544 -4.261 -0.147 1.00 0.00 ATOM 227 O LEU 39 0.719 -4.689 3.554 1.00 0.00 ATOM 228 C LEU 39 0.244 -5.342 2.628 1.00 0.00 ATOM 229 N ARG 40 -0.977 -5.157 2.153 1.00 0.00 ATOM 230 CA ARG 40 -1.866 -4.152 2.694 1.00 0.00 ATOM 231 CB ARG 40 -3.201 -4.160 1.947 1.00 0.00 ATOM 232 CG ARG 40 -4.175 -3.086 2.406 1.00 0.00 ATOM 233 CD ARG 40 -5.508 -3.209 1.690 1.00 0.00 ATOM 234 NE ARG 40 -6.208 -4.443 2.042 1.00 0.00 ATOM 235 CZ ARG 40 -6.877 -4.623 3.176 1.00 0.00 ATOM 236 NH1 ARG 40 -7.482 -5.780 3.413 1.00 0.00 ATOM 237 NH2 ARG 40 -6.940 -3.648 4.072 1.00 0.00 ATOM 238 O ARG 40 -2.004 -3.503 4.995 1.00 0.00 ATOM 239 C ARG 40 -2.149 -4.401 4.168 1.00 0.00 ATOM 240 N GLU 41 -2.559 -5.620 4.490 1.00 0.00 ATOM 241 CA GLU 41 -2.869 -5.974 5.867 1.00 0.00 ATOM 242 CB GLU 41 -3.517 -7.358 5.932 1.00 0.00 ATOM 243 CG GLU 41 -4.842 -7.459 5.194 1.00 0.00 ATOM 244 CD GLU 41 -5.385 -8.873 5.162 1.00 0.00 ATOM 245 OE1 GLU 41 -4.714 -9.781 5.698 1.00 0.00 ATOM 246 OE2 GLU 41 -6.483 -9.077 4.603 1.00 0.00 ATOM 247 O GLU 41 -1.662 -5.765 7.928 1.00 0.00 ATOM 248 C GLU 41 -1.610 -5.999 6.721 1.00 0.00 TER END