Best Alignments for T0474

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bj7A/T0474-2bj7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bj7A/T0474-2bj7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6403e-042.07e-15 a.43.1.3
d.58.18.4
2cpgA/T0474-2cpgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cpgA/T0474-2cpgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4839e-028.39e-08 2cpgA a.43.1.3
2gpeA/T0474-2gpeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gpeA/T0474-2gpeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0561e-026.74e-10
2an7A/T0474-2an7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2an7A/T0474-2an7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4337e-012.21e-05
1x93A/T0474-1x93A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x93A/T0474-1x93A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7029e-012.26e-07
2k29A/T0474-2k29A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2k29A/T0474-2k29A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1636e+001.86e-07
2aa1A/T0474-2aa1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aa1A/T0474-2aa1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2688e+001.46e-04 a.1.1.2
1tc3C/T0474-1tc3C-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tc3C/T0474-1tc3C-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3666e+002.50e-10 1tc3C a.4.1.2
2bsqE/T0474-2bsqE-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bsqE/T0474-2bsqE-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4600e+001.26e-07 a.43.1.8
1irqA/T0474-1irqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1irqA/T0474-1irqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4839e+002.53e-06 a.43.1.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001