# List of top-scoring protein chains for T0474.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bj7A 138 2.34e-02 a.43.1.3,d.58.18.4 128608,128609 2cpgA 45 1.14e-01 2cpgA a.43.1.3 17455 1b01A 45 1.18e-01 2cpgA a.43.1.3 17458 1p94A 76 2.23e-01 a.43.1.3 94380 2jxgA 45 2.39e-01 2gpeA 52 6.35e-01 2hzaA 133 7.31e-01 a.43.1.3,d.58.18.4 136907,136908 2q2kA 70 1.08e+00 2ay0A 58 1.10e+00 2rexA 121 1.66e+00 2r2oA 138 1.80e+00 1gobA 155 2.88e+00 c.55.3.1 33565 1w6kA 732 3.20e+00 a.102.4.2,a.102.4.2 114271,114272 1w6jA 732 3.21e+00 a.102.4.2,a.102.4.2 114269,114270 1m6xC 423 3.62e+00 a.60.9.1,d.163.1.1 78712,78713 2an7A 83 3.67e+00 1floA 422 3.94e+00 1floA a.60.9.1,d.163.1.1 18106,42166 1kz9A 159 4.60e+00 c.16.1.1 73339 1kyyA 159 4.63e+00 c.16.1.1 73307 1m6xA 423 4.71e+00 a.60.9.1,d.163.1.1 78708,78709 2a87A 335 5.41e+00 1rbtA 155 5.57e+00 c.55.3.1 33555 2fbaA 492 6.67e+00 a.102.1.1 133239 1lawA 155 7.21e+00 c.55.3.1 33557 1yvkA 163 8.39e+00 d.108.1.1 124101 2yv0X 155 8.77e+00 2a59A 159 9.63e+00 2h1tA 188 9.64e+00 1w8kA 447 1.32e+01 2gtrA 261 1.37e+01 1rbuA 155 1.40e+01 c.55.3.1 33552 1wsiA 155 1.41e+01 c.55.3.1 114853 1wshA 155 1.42e+01 c.55.3.1 114849 1kvaA 155 1.51e+01 c.55.3.1 33559 1kvbA 155 1.51e+01 c.55.3.1 33562 1rdcA 155 1.51e+01 c.55.3.1 33568 1x93A 55 1.52e+01 1rdaA 155 1.52e+01 c.55.3.1 33567 1kvcA 155 1.52e+01 c.55.3.1 33560 2rn2A 155 1.53e+01 c.55.3.1 33551 1wsfA 155 1.55e+01 c.55.3.1 121230 1rbvA 155 1.56e+01 c.55.3.1 33553 1lavA 155 1.57e+01 c.55.3.1 33554 1rdbA 155 1.58e+01 c.55.3.1 33561 1wsjA 155 1.59e+01 c.55.3.1 114857 2j4wD 445 1.68e+01 1k5dB 201 1.77e+01 b.55.1.3 68169 2z1hA 155 1.79e+01 1kz1A 159 1.81e+01 c.16.1.1 73318 1jl1A 155 1.93e+01 c.55.3.1 66821 1k87A 669 1.96e+01 a.176.1.1,c.1.23.2 77286,77287 1f21A 155 1.96e+01 2rn2 c.55.3.1 33550 1g15A 155 2.02e+01 2rn2 c.55.3.1 60197 2z8vA 335 2.16e+01 1z40A 336 2.17e+01 2yutA 207 2.23e+01 1zgzA 122 2.36e+01 c.23.1.1 125065 1yxeA 140 2.39e+01 1yshD 73 2.41e+01 1rdhA 146 2.44e+01 1rthA c.55.3.1 33588 1hrhA 136 2.45e+01 1rthA c.55.3.1 33577 1jxbA 155 2.47e+01 c.55.3.1 71931 1rbrA 155 2.54e+01 c.55.3.1 33556 1pbxA 143 2.63e+01 1abwA a.1.1.2 15403 1rbsA 155 2.67e+01 c.55.3.1 33558 1m4lA 307 2.74e+01 c.56.5.1 78604 2ctcA 307 2.77e+01 c.56.5.1 33802 5cpaA 307 2.83e+01 c.56.5.1 33811 1qtoA 122 2.87e+01 1bylA d.32.1.2 38494 2ysrA 105 2.87e+01 1nwaA 203 2.93e+01 d.58.28.1 86295 1cbxA 307 2.98e+01 c.56.5.1 33813 1ymeA 309 3.07e+01 c.56.5.1 33804 1pytB 309 3.10e+01 1aye c.56.5.1 33820 1s67L 119 3.11e+01 d.110.3.2 105303 1bavA 309 3.21e+01 1aye c.56.5.1 33806 2p0iA 456 3.32e+01 1viuA 203 3.46e+01 d.113.1.1 100771 2z1gA 155 3.58e+01 2e1dA 331 3.60e+01 2cwnA 332 3.61e+01 c.1.10.1 130929 1wj6A 101 3.69e+01 d.15.2.2 114693 1v9yA 167 3.72e+01 d.110.3.2 108454 2qjuA 511 3.72e+01 2h8fA 142 3.75e+01 a.1.1.2 136239 2a65A 519 3.75e+01 1j1vA 94 3.76e+01 a.4.12.2 83981 2pthA 193 3.80e+01 c.56.3.1 33793 3cz6A 168 3.84e+01 2auwA 170 3.89e+01 a.35.1.10,d.331.1.1 127339,127340 1g5hA 454 3.89e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 2faoA 309 4.12e+01 2g4sA 86 4.15e+01 2bkfA 87 4.18e+01 d.15.2.2 128699 2guwA 484 4.22e+01 1q0wA 24 4.23e+01 j.105.1.1 95515 1vdzA 588 4.28e+01 2ca9A 148 4.28e+01 1sqpK 56 4.35e+01 2aa1A 142 4.62e+01 a.1.1.2 126463 2vofA 157 4.77e+01 2jobA 102 4.95e+01 1ts2A 194 5.23e+01 1aw7A b.40.2.2,d.15.6.1 25174,37763 1o1wA 138 5.28e+01 c.55.3.1 81078 2z1iA 155 5.50e+01 2z1jA 155 5.50e+01 1kz6A 159 5.51e+01 c.16.1.1 73328 2j5lA 581 5.52e+01 1tv6A 560 5.54e+01 c.55.3.1,e.8.1.2 107347,107348 1ikxA 560 5.56e+01 1rthA c.55.3.1,e.8.1.2 62533,62534 1bqnA 558 5.56e+01 1rthA c.55.3.1,e.8.1.2 33599,43064 1kz4A 159 5.57e+01 c.16.1.1 73323 1ikwA 560 5.57e+01 1rthA c.55.3.1,e.8.1.2 62530,62531 1tvxA 75 5.59e+01 1tvxA d.9.1.1 37441 1hquA 560 5.65e+01 1rthA c.55.3.1,e.8.1.2 61157,61158 2be2A 560 5.65e+01 2iajA 560 5.66e+01 1jadA 251 5.71e+01 h.4.10.1 66461 1r0aA 558 5.74e+01 c.55.3.1,e.8.1.2 104676,104677 1hniA 558 5.75e+01 1rthA c.55.3.1,e.8.1.2 33586,43044 1uwbA 558 5.77e+01 1rthA c.55.3.1,e.8.1.2 33596,43062 1qe1A 558 5.80e+01 1rthA c.55.3.1,e.8.1.2 33593,43054 2vg5A 557 5.81e+01 1eetA 557 5.84e+01 1rthA c.55.3.1,e.8.1.2 33608,43078 3hvtA 556 5.93e+01 1rthA c.55.3.1,e.8.1.2 33598,43066 1am9A 82 5.95e+01 1am9A a.38.1.1 17140 2ze2A 557 6.04e+01 2zd1A 557 6.05e+01 3bgrA 557 6.06e+01 1dloA 556 6.06e+01 1rthA c.55.3.1,e.8.1.2 33584,43040 1f05A 337 6.10e+01 1onrA c.1.10.1 29173 1qpwB 146 6.16e+01 1abwA a.1.1.2 15569 1napA 70 6.29e+01 1tvxA d.9.1.1 37445 1hvuA 554 6.46e+01 1rthA c.55.3.1,e.8.1.2 33600,43068 2arjB 215 6.51e+01 2j9jA 99 6.63e+01 2fu2A 102 6.69e+01 2o40A 203 6.76e+01 2jvjA 132 6.79e+01 2jphA 123 6.83e+01 1uklC 61 6.91e+01 a.38.1.1 99495 2j9jB 99 6.94e+01 1hysA 553 6.98e+01 1rthA c.55.3.1,e.8.1.2 61417,61418 2jviA 132 7.08e+01 1bgfA 124 7.12e+01 a.90.1.1 18537 1n47A 233 7.19e+01 b.29.1.1 79983 1c4wA 128 7.22e+01 3chy c.23.1.1 31046 1zdmA 129 7.23e+01 c.23.1.1 124941 1pjzA 203 7.49e+01 c.66.1.36 94794 2i5jA 552 7.61e+01 2hhcA 330 7.64e+01 2jvkA 132 7.67e+01 1zd1A 284 7.70e+01 1wkyA 464 7.74e+01 b.18.1.31,c.1.8.3 120992,120993 2p7vB 68 7.86e+01 2zc6B 390 7.98e+01