# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bj7A 138 8.33e-03 a.43.1.3,d.58.18.4 128608,128609 2cpgA 45 1.64e-01 2cpgA a.43.1.3 17455 1p94A 76 6.27e-01 a.43.1.3 94380 2gpeA 52 7.01e-01 1fadA 99 2.70e+00 1fadA a.77.1.2 18428 2pth 193 2.76e+00 2pth 2pthA 193 2.76e+00 c.56.3.1 33793 2q2kA 70 2.83e+00 1tvxA 75 3.08e+00 1tvxA d.9.1.1 37441 2p1aA 154 3.65e+00 1qmqA 414 3.78e+00 1phd a.104.1.1 18907 2fu2A 102 4.72e+00 2rfrA 155 6.73e+00 2aa1A 144 7.00e+00 a.1.1.2 126463 1js1X 324 7.20e+00 c.78.1.1,c.78.1.1 71834,71835 2an7A 83 7.84e+00 1jjiA 311 8.58e+00 c.69.1.2 66766 2qimA 158 8.76e+00 1tx9A 151 9.08e+00 a.84.1.1 119383 3proC 166 9.36e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1xqwA 293 9.47e+00 3brcA 156 9.76e+00 2jigA 224 9.94e+00 2h8fA 143 1.05e+01 a.1.1.2 136239 1mtzA 293 1.11e+01 c.69.1.7 79467 2j8gA 339 1.21e+01 3b40A 417 1.26e+01 1h09A 338 1.31e+01 b.109.1.1,c.1.8.8 83420,83421 1jadA 251 1.41e+01 h.4.10.1 66461 1nuuA 252 1.43e+01 c.26.1.3 86209 1qvbA 481 1.57e+01 1qvbA c.1.8.4 28983 1b74A 254 1.92e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1r3eA 309 2.05e+01 b.122.1.1,d.265.1.2 96907,96908 1dc1A 323 2.07e+01 1dc1A c.52.1.11 33321 2r2oA 138 2.17e+01 2pl5A 366 2.17e+01 1x93A 55 2.22e+01 1obpA 159 2.39e+01 1obpA b.60.1.1 27092 1ak2A 233 2.48e+01 c.37.1.1,g.41.2.1 31894,45195 1uwvA 433 2.56e+01 b.40.4.12,c.66.1.40 100128,100129 2dobA 83 2.64e+01 2ts1 419 2.72e+01 2ts1 2d4pA 141 2.75e+01 1ygtA 111 2.80e+01 2p61A 162 2.81e+01 1uklC 61 2.83e+01 a.38.1.1 99495 1floA 422 2.88e+01 1floA a.60.9.1,d.163.1.1 18106,42166 2o5uA 148 3.22e+01 1z0xA 220 3.22e+01 a.4.1.9,a.121.1.1 124334,124335 1vjkA 98 3.23e+01 d.15.3.1 108631 4ts1A 319 3.27e+01 2ts1 c.26.1.1 31565 2bsqE 77 3.27e+01 a.43.1.8 129102 2rckA 225 3.38e+01 2av9A 147 3.41e+01 d.38.1.1 127365 2d3dA 88 3.41e+01 1v4xA 144 3.42e+01 a.1.1.2 108363 2fwtA 125 3.49e+01 1utuA 108 3.51e+01 1tc3C 51 3.53e+01 1tc3C a.4.1.2 16025 1jilA 420 3.57e+01 c.26.1.1 66745 2r0cA 549 3.58e+01 1vj7A 393 3.68e+01 a.211.1.1,d.218.1.8 100801,100802 1qtoA 122 3.70e+01 1bylA d.32.1.2 38494 2qhoB 53 3.77e+01 2zc2A 78 3.78e+01 1wfdA 93 3.84e+01 a.7.14.1 114578 2gyqA 175 3.84e+01 a.25.1.4 135863 1cd31 152 3.87e+01 1cd31 2qtdA 105 3.89e+01 1gt1A 159 3.92e+01 b.60.1.1 90515 2pigA 334 3.95e+01 1f8vA 355 4.00e+01 2bbvA b.121.4.4 23329 1uz3A 102 4.04e+01 2v1yB 170 4.28e+01 2q4pA 170 4.37e+01 1z6rA 406 4.42e+01 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2es4D 332 4.49e+01 2f9cA 334 4.49e+01 b.81.1.7 133158 1exqA 154 4.53e+01 1b9dA c.55.3.2 33646 2epiA 100 4.63e+01 2ph7A 246 4.68e+01 1m12A 84 4.74e+01 a.64.1.1 84745 2fwrA 472 4.75e+01 c.37.1.19,c.37.1.19 134253,134254 1iqoA 88 4.78e+01 d.214.1.1 71277 2f1kA 279 4.84e+01 a.100.1.12,c.2.1.6 132772,132773 1am9A 82 4.88e+01 1am9A a.38.1.1 17140 1nuyA 337 4.90e+01 e.7.1.1 86213 1g5hA 454 4.90e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1t15A 214 4.94e+01 c.15.1.3,c.15.1.3 99067,99068 2gviA 204 5.01e+01 2fxaA 207 5.07e+01 a.4.5.28 134304 1bia 321 5.09e+01 1bia 1biaA 321 5.09e+01 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1yc5A 246 5.14e+01 c.31.1.5 122910 2g5fA 450 5.41e+01 d.161.1.1 134654 1tdtA 259 5.48e+01 3tdt b.81.1.2 28055 2hyiD 77 5.48e+01 2je6B 250 5.48e+01 1zw8A 64 5.60e+01 1wkaA 147 5.63e+01 b.51.1.1 120978 1din 236 5.73e+01 1din 2v74B 346 5.79e+01 1ucnA 152 5.82e+01 d.58.6.1 99183 1kqnA 279 5.84e+01 c.26.1.3 77492 3b3fA 341 5.95e+01 1vjqA 79 5.96e+01 k.43.1.1 100830 2b5tI 432 6.13e+01 e.1.1.1 127905 1bquA 215 6.13e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 3bs5B 80 6.22e+01 1oeyJ 107 6.25e+01 d.15.2.2 92804 1bl3A 160 6.34e+01 1b9dA c.55.3.2 33655 3bhoA 208 6.36e+01 2f9zC 159 6.54e+01 2hstA 143 6.59e+01 2yx6A 121 6.60e+01 2r8rA 228 6.91e+01 1tuwA 109 6.98e+01 d.58.4.8 107346 2h1tA 188 7.05e+01 1us8A 147 7.06e+01 c.37.1.12 99859 7ahlA 293 7.28e+01 7ahlA f.6.1.1 43812 1xrxA 50 7.30e+01 a.43.1.7 122264 1zt2B 212 7.36e+01 a.262.1.1 125625 2yutA 207 7.40e+01 1fezA 256 7.46e+01 1fezA c.108.1.3 43343 1swvA 267 7.47e+01 c.108.1.3 112134 2rhfA 77 7.49e+01 3bs3A 76 7.54e+01 1uhgA 385 7.58e+01 e.1.1.1 88491 1dz4A 414 7.64e+01 1phd a.104.1.1 18903 2e5vA 472 7.66e+01 2p8iA 117 7.66e+01 d.58.55.1 139522 1ttwA 138 7.68e+01 d.198.1.1 107308 1k55A 246 7.75e+01 e.3.1.1 68156 1ppjA 446 7.80e+01 d.185.1.1,d.185.1.1 104252,104253 1q1vA 70 7.87e+01 a.159.4.1 104479 1ovaA 386 7.89e+01 1ovaA e.1.1.1 42619 1ymmB 198 7.92e+01 b.1.1.2,d.19.1.1 123703,123704 1itg 166 7.95e+01 1b9dA