Best Alignments for T0474

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2bj7A	1.0330e-02	2bj7A/T0474-2bj7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.43.1.3 d.58.18.4
2ca9A	1.0985e-02	2ca9A/T0474-2ca9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cpgA	1.5914e-01	2cpgA/T0474-2cpgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.43.1.3
1b01A	1.7704e-01	1b01A/T0474-1b01A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.43.1.3
2gpeA	5.0920e-01	2gpeA/T0474-2gpeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p94A	3.3269e+00	1p94A/T0474-1p94A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.43.1.3
2bsqE	8.3656e+00	2bsqE/T0474-2bsqE-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.43.1.8
2jgpA	2.2982e+01	2jgpA/T0474-2jgpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2q2kA	2.4664e+01	2q2kA/T0474-2q2kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e55A	2.5542e+01	2e55A/T0474-2e55A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ehjA	2.7277e+01	2ehjA/T0474-2ehjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2an7A	3.0147e+01	2an7A/T0474-2an7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z1mA	3.3372e+01	2z1mA/T0474-2z1mA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ba3A	3.8291e+01	2ba3A/T0474-2ba3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bqpA	4.3639e+01	3bqpA/T0474-3bqpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cz6A	4.3675e+01	3cz6A/T0474-3cz6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dztA	4.5553e+01	2dztA/T0474-2dztA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q0wA	4.6272e+01	1q0wA/T0474-1q0wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	j.105.1.1
1lf7A	5.0403e+01	1lf7A/T0474-1lf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.60.1.1
1rd5A	5.0824e+01	1rd5A/T0474-1rd5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001