# TARGET T0474 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0474.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.8793 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.031 0.042 0.017 0.001 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.008 0.068 0.740 2 N 0.036 0.058 0.007 0.002 0.018 0.025 0.014 0.004 0.001 0.001 0.002 0.001 0.004 0.001 0.001 0.001 0.203 0.012 0.091 0.516 3 S 0.038 0.040 0.006 0.001 0.003 0.007 0.007 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.010 0.076 0.711 4 L 0.070 0.088 0.009 0.001 0.001 0.003 0.002 0.002 0.008 0.001 0.001 0.001 0.002 0.002 0.002 0.002 0.177 0.013 0.109 0.504 5 A 0.068 0.098 0.006 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.116 0.017 0.120 0.562 6 G 0.134 0.129 0.007 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.003 0.001 0.001 0.001 0.077 0.031 0.086 0.524 7 I 0.212 0.148 0.033 0.003 0.001 0.001 0.001 0.001 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.176 0.022 0.082 0.308 8 D 0.061 0.164 0.005 0.001 0.001 0.003 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.212 0.011 0.115 0.417 9 M 0.118 0.165 0.015 0.001 0.004 0.002 0.004 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.167 0.025 0.049 0.446 10 G 0.112 0.111 0.007 0.001 0.001 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.348 0.021 0.104 0.287 11 R 0.132 0.047 0.034 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.487 0.016 0.096 0.180 12 I 0.041 0.049 0.005 0.002 0.002 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.693 0.004 0.034 0.162 13 L 0.011 0.021 0.003 0.001 0.003 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.005 0.805 0.003 0.023 0.111 14 L 0.016 0.021 0.004 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.780 0.004 0.031 0.127 15 D 0.009 0.015 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.002 0.004 0.004 0.597 0.005 0.092 0.260 16 L 0.007 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.326 0.003 0.111 0.546 17 S 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.002 0.673 0.273 18 N 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.003 0.081 0.860 19 E 0.008 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.297 0.674 20 V 0.019 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.738 0.202 21 I 0.023 0.893 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.058 22 K 0.011 0.933 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.042 23 Q 0.052 0.884 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.002 0.050 24 L 0.087 0.880 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.019 25 D 0.046 0.822 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.028 0.005 0.090 26 D 0.030 0.716 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.029 0.011 0.174 27 L 0.035 0.863 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.010 0.078 28 E 0.066 0.753 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.015 0.018 0.134 29 V 0.052 0.767 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.012 0.015 0.120 30 Q 0.076 0.788 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.014 0.010 0.096 31 R 0.123 0.680 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.032 0.010 0.144 32 N 0.252 0.330 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.106 0.016 0.243 33 L 0.272 0.086 0.235 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.016 0.041 0.319 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 35 R 0.010 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.003 0.070 0.895 36 A 0.050 0.047 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.148 0.745 37 D 0.027 0.179 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.167 0.622 38 L 0.021 0.605 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.288 39 L 0.008 0.918 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.068 40 R 0.001 0.966 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.026 41 E 0.001 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.018 42 A 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 43 V 0.003 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 44 D 0.004 0.982 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.008 45 Q 0.002 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.005 46 Y 0.013 0.974 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.008 47 L 0.009 0.963 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.010 48 I 0.020 0.935 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.003 0.026 49 N 0.094 0.839 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.001 0.026 50 Q 0.214 0.638 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.090 0.002 0.048 51 S 0.239 0.339 0.094 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.072 0.024 0.216 52 Q 0.039 0.102 0.190 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.013 0.077 0.553 53 T 0.022 0.067 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.006 0.270 0.609 54 A 0.079 0.069 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.012 0.086 0.712 55 R 0.134 0.206 0.005 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.074 0.017 0.150 0.400 56 T 0.212 0.215 0.013 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.038 0.025 0.155 0.331 57 S 0.354 0.279 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.034 0.047 0.255 58 V 0.380 0.277 0.021 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.018 0.025 0.210 59 P 0.013 0.064 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.003 0.035 0.861 60 G 0.165 0.051 0.018 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.103 0.041 0.147 0.461 61 I 0.449 0.064 0.015 0.004 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.170 0.015 0.055 0.218 62 W 0.056 0.141 0.004 0.002 0.007 0.003 0.005 0.003 0.003 0.003 0.003 0.001 0.006 0.005 0.016 0.005 0.318 0.011 0.090 0.319 63 Q 0.117 0.105 0.005 0.001 0.002 0.005 0.005 0.004 0.003 0.001 0.002 0.002 0.004 0.011 0.005 0.003 0.164 0.021 0.095 0.445 64 G 0.220 0.100 0.004 0.001 0.001 0.001 0.002 0.002 0.005 0.005 0.012 0.003 0.016 0.014 0.012 0.004 0.108 0.040 0.086 0.366 65 C 0.263 0.061 0.033 0.005 0.001 0.001 0.001 0.001 0.003 0.010 0.005 0.002 0.004 0.002 0.001 0.001 0.080 0.034 0.129 0.367 66 E 0.031 0.058 0.007 0.001 0.001 0.001 0.001 0.001 0.025 0.019 0.005 0.001 0.001 0.001 0.001 0.001 0.036 0.009 0.219 0.586 67 E 0.044 0.027 0.018 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.013 0.168 0.648 68 D 0.029 0.048 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.014 0.268 0.615 69 G 0.273 0.026 0.044 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.077 0.145 0.410 70 V 0.078 0.110 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.005 0.260 0.481 71 E 0.034 0.127 0.007 0.001 0.008 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.093 0.006 0.186 0.528 72 Y 0.031 0.516 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.097 0.327 73 Q 0.021 0.819 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.003 0.041 0.087 74 R 0.008 0.908 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.010 0.064 75 K 0.012 0.926 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.007 0.049 76 L 0.036 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.002 0.029 77 R 0.043 0.905 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.003 0.031 78 E 0.032 0.835 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.017 0.004 0.099 79 E 0.099 0.760 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.030 0.007 0.097 80 W 0.121 0.741 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.017 0.009 0.093