# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.008628	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.02158		
2gpeA	52	0.1873		
1p94A	76	0.1962	a.43.1.3	94380
1b01A	45	0.2482	a.43.1.3	17458
2cpgA	45	0.2524	a.43.1.3	17455
2q2kA	70	4.420		
2q1sA	377	8.173		
2z1mA	345	9.776		
2bsqE	77	12.64	a.43.1.8	129102
1lf7A	182	13.90	b.60.1.1	73878
3bqpA	80	21.16		
1icxA	155	21.22	d.129.3.1	71191
2k29A	53	23.83		
2an7A	83	24.60		
1n7hA	381	25.84	c.2.1.2	80250
2pzmA	330	26.06		
1t2aA	375	28.39	c.2.1.2	99078
2a6tA	271	29.04	a.242.1.1,d.113.1.7	126309,126310
1x93A	55	29.38		
1hssA	124	30.83	a.52.1.2	17819
1udcA	338	33.52	c.2.1.2	29785
2jgpA	520	34.39		
1aoiB	87	35.74	a.22.1.1	16470
1n69A	81	37.36	a.64.1.3	80118
1kewA	361	37.41	c.2.1.2	68544
1ltqA	301	38.32	c.108.1.9,c.37.1.1	78208,78209
1qmrA	159	39.19	d.129.3.1	41314
1a0iA	348	40.05	b.40.4.6,d.142.2.1	25363,41577
1tuwA	109	41.64	d.58.4.8	107346
2hjmA	103	42.75		
1q9jA	422	43.74	c.43.1.2,c.43.1.2	104590,104591
2ba3A	51	45.35		
1pbyA	489	45.84	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
2c5aA	379	47.68	c.2.1.2	129894
1bv1	159	48.31		
1i2cA	404	48.83	c.2.1.2	83666
1rgeA	96	49.22	d.1.1.2	36028
2z06A	252	52.92		
2rg4A	216	53.01		
1nlwB	76	53.20	a.38.1.1	80634
2bllA	345	54.27	c.2.1.2	128733
1bxkA	355	54.82	c.2.1.2	29803
1ly1A	181	55.07	c.37.1.1	74334
1tc3C	51	56.17	a.4.1.2	16025
1ek6A	348	56.43	c.2.1.2	29800
2b69A	343	57.27	c.2.1.2	127974
1b6fA	159	57.82	d.129.3.1	41316
2d7eA	105	59.04		
1u53A	196	59.05		
3bk6A	188	61.76		
1rkxA	357	62.42	c.2.1.2	97631
2g2bA	150	62.55		
1qrrA	394	65.08	c.2.1.2	29824
1rpnA	335	65.39	c.2.1.2	97708
1u9jA	358	65.42	c.2.1.2	113243
1ecaA	136	66.06	a.1.1.2	15209
1hpwA	129	66.31	d.24.1.1	61118
1q0wA	24	66.48	j.105.1.1	95515
2qypA	91	68.52		
1qynA	153	76.66	d.33.1.1	96597
1bwsA	321	81.12	c.2.1.2	29812
1z7bA	358	81.17	c.2.1.2	124599
1y8oA	419	81.24		
1r6dA	337	81.72	c.2.1.2	97148
1kkoA	413	82.67	c.1.11.2,d.54.1.1	68675,68676
1xel	338	87.06