# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.006149 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.01063 1p94A 76 0.1707 a.43.1.3 94380 2gpeA 52 0.2002 1b01A 45 0.2456 a.43.1.3 17458 2cpgA 45 0.3022 a.43.1.3 17455 2q2kA 70 3.217 3bqpA 80 9.149 2z1mA 345 11.03 2q1sA 377 11.14 2an7A 83 11.86 2bsqE 77 13.73 a.43.1.8 129102 1x93A 55 15.16 2k29A 53 16.05 1pbyA 489 17.94 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1icxA 155 18.14 d.129.3.1 71191 2pzmA 330 20.45 1lf7A 182 21.18 b.60.1.1 73878 1n7hA 381 27.32 c.2.1.2 80250 1hpwA 129 30.32 d.24.1.1 61118 2g2bA 150 30.76 1hssA 124 31.29 a.52.1.2 17819 1rkxA 357 31.89 c.2.1.2 97631 2a6tA 271 35.49 a.242.1.1,d.113.1.7 126309,126310 1t2aA 375 35.97 c.2.1.2 99078 1q9jA 422 36.13 c.43.1.2,c.43.1.2 104590,104591 1um8A 376 44.40 c.37.1.20 99580 1ltqA 301 47.80 c.108.1.9,c.37.1.1 78208,78209 2jgpA 520 48.28 1udcA 338 48.34 c.2.1.2 29785 2qypA 91 48.52 3bk6A 188 49.01 1kewA 361 49.39 c.2.1.2 68544 2c5aA 379 50.99 c.2.1.2 129894 1n69A 81 53.22 a.64.1.3 80118 2rg4A 216 53.59 1i2cA 404 54.26 c.2.1.2 83666 2hjmA 103 54.52 2d7eA 105 58.41 2bllA 345 59.81 c.2.1.2 128733 1bea 127 62.82 1qynA 153 63.70 d.33.1.1 96597 1qrrA 394 64.45 c.2.1.2 29824 1tuwA 109 65.04 d.58.4.8 107346 1z7bA 358 65.77 c.2.1.2 124599 1u9jA 358 67.54 c.2.1.2 113243 1tc3C 51 68.88 a.4.1.2 16025 1b6fA 159 69.88 d.129.3.1 41316 1qmrA 159 70.07 d.129.3.1 41314 2b69A 343 71.12 c.2.1.2 127974 1u53A 196 72.36 1qqsA 174 73.09 b.60.1.1 27143 2pil 159 76.04 1bv1 159 76.56 1qveA 126 79.62 d.24.1.1 104594 2ba3A 51 80.21 1rpnA 335 81.09 c.2.1.2 97708 1ek6A 348 81.79 c.2.1.2 29800 1wgmA 98 83.38 g.44.1.2 114616 1ecaA 136 83.96 a.1.1.2 15209 2z06A 252 84.52 1q0wA 24 84.64 j.105.1.1 95515 1b55A 169 86.66 b.55.1.1 26963 3cjeA 167 87.86 1r6dA 337 88.82 c.2.1.2 97148