# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.000926 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.001290 1p94A 76 0.04040 a.43.1.3 94380 2gpeA 52 0.06024 2cpgA 45 0.07495 a.43.1.3 17455 1b01A 45 0.07937 a.43.1.3 17458 2k29A 53 3.218 2an7A 83 4.110 1q9jA 422 4.738 c.43.1.2,c.43.1.2 104590,104591 2z1mA 345 5.224 2q2kA 70 5.892 2jgpA 520 7.065 1lf7A 182 9.005 b.60.1.1 73878 2pzmA 330 9.372 1n7hA 381 10.53 c.2.1.2 80250 1icxA 155 11.36 d.129.3.1 71191 2bsqE 77 11.85 a.43.1.8 129102 1rkxA 357 12.28 c.2.1.2 97631 2ba3A 51 14.50 2d7eA 105 15.09 3bqpA 80 16.42 1x93A 55 17.01 2q1sA 377 17.43 1t2aA 375 18.04 c.2.1.2 99078 1rpnA 335 22.38 c.2.1.2 97708 1z7bA 358 23.76 c.2.1.2 124599 2bllA 345 23.80 c.2.1.2 128733 1ltqA 301 24.53 c.108.1.9,c.37.1.1 78208,78209 1kewA 361 25.40 c.2.1.2 68544 1udcA 338 26.36 c.2.1.2 29785 1pbyA 489 26.93 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1qqsA 174 27.16 b.60.1.1 27143 1hssA 124 27.20 a.52.1.2 17819 2b69A 343 27.33 c.2.1.2 127974 1u9jA 358 27.44 c.2.1.2 113243 1aoiB 87 29.15 a.22.1.1 16470 2c5aA 379 29.16 c.2.1.2 129894 1tc3C 51 29.66 a.4.1.2 16025 1bxkA 355 30.01 c.2.1.2 29803 1r6dA 337 35.77 c.2.1.2 97148 1zg2A 107 40.85 3bw8A 217 41.05 1ly1A 181 43.96 c.37.1.1 74334 1ek6A 348 45.69 c.2.1.2 29800 2zc3A 168 47.41 2pil 159 49.71 2qhoB 53 49.78 1b6fA 159 50.55 d.129.3.1 41316 2a6tA 271 51.49 a.242.1.1,d.113.1.7 126309,126310 1xel 338 52.41 1n69A 81 52.43 a.64.1.3 80118 2hjmA 103 52.63 1gt1A 159 53.36 b.60.1.1 90515 1ecaA 136 54.57 a.1.1.2 15209 1l5aA 436 55.47 c.43.1.2,c.43.1.2 75923,75924 1u53A 196 55.92 1qveA 126 57.55 d.24.1.1 104594 1tr8A 102 57.86 1bsvA 321 59.57 c.2.1.2 29809 1qmrA 159 59.81 d.129.3.1 41314 1mylA 53 59.87 a.43.1.1 17427 2d1hA 109 60.44 a.4.5.50 131125 1bv1 159 60.47 1i06A 180 61.35 b.60.1.1 27131 1bwsA 321 61.75 c.2.1.2 29812 1kkoA 413 64.72 c.1.11.2,d.54.1.1 68675,68676 2g2bA 150 64.75 4crxA 322 65.74 a.60.9.1,d.163.1.1 18095,42155 1kx5B 102 66.32 a.22.1.1 77594 1hpwA 129 66.46 d.24.1.1 61118 1u55A 188 68.95 d.278.1.1 107677 1wy6A 172 71.11 a.118.20.1 121432 1sw5B 275 74.00 c.94.1.1 106070 2pk3A 321 74.07 1nlwB 76 74.78 a.38.1.1 80634 1i3kA 348 75.15 c.2.1.2 61595 1i2cA 404 76.33 c.2.1.2 83666 2rg4A 216 78.64 3cnqP 80 79.20 2ou3A 161 79.20 1ew3A 159 79.22 b.60.1.1 27114 1an4A 65 83.58 a.38.1.1 17136 2hi2A 158 84.83 2o09A 189 86.93 2qypA 91 87.03 1ls1A 295 88.75 a.24.13.1,c.37.1.10 78170,78171 2hmvA 144 89.94 c.2.1.9 136615