# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.01474		
2bj7A	138	0.01681	a.43.1.3,d.58.18.4	128608,128609
2gpeA	52	0.2607		
1b01A	45	0.4235	a.43.1.3	17458
2cpgA	45	0.5222	a.43.1.3	17455
1p94A	76	1.617	a.43.1.3	94380
2q2kA	70	4.847		
2k29A	53	11.23		
3bqpA	80	12.13		
2z1mA	345	14.27		
1x93A	55	16.93		
2g2bA	150	19.70		
2q1sA	377	19.81		
1hssA	124	22.59	a.52.1.2	17819
2an7A	83	23.35		
2bsqE	77	24.24	a.43.1.8	129102
1n7hA	381	24.76	c.2.1.2	80250
1n69A	81	24.96	a.64.1.3	80118
1t2aA	375	25.77	c.2.1.2	99078
1pbyA	489	28.46	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
1lf7A	182	28.82	b.60.1.1	73878
2z06A	252	31.75		
2b69A	343	32.61	c.2.1.2	127974
1rkxA	357	34.42	c.2.1.2	97631
2hjmA	103	37.02		
2jgpA	520	38.54		
1qrrA	394	40.39	c.2.1.2	29824
1icxA	155	43.75	d.129.3.1	71191
1bea	127	50.89		
1rpnA	335	50.99	c.2.1.2	97708
1ecaA	136	51.82	a.1.1.2	15209
1hpwA	129	52.18	d.24.1.1	61118
1tuwA	109	52.83	d.58.4.8	107346
2d7dB	40	53.91		
1i2cA	404	55.83	c.2.1.2	83666
2rg4A	216	58.53		
2a6tA	271	64.27	a.242.1.1,d.113.1.7	126309,126310
1q0wA	24	69.26	j.105.1.1	95515
1i24A	404	72.51	c.2.1.2	83663
2ajtA	500	72.56	b.43.2.2,c.85.1.2	126894,126895
3bk6A	188	72.85		
1udcA	338	72.87	c.2.1.2	29785
1nlwB	76	74.08	a.38.1.1	80634
1u9jA	358	76.80	c.2.1.2	113243
2ba3A	51	76.85		
1um8A	376	83.81	c.37.1.20	99580
1ek6A	348	85.05	c.2.1.2	29800
1nlwA	80	85.28	a.38.1.1	80633
2bllA	345	86.53	c.2.1.2	128733
1z7bA	358	87.24	c.2.1.2	124599
2qulA	290	87.48		
1qmrA	159	88.66	d.129.3.1	41314