# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.009570		
2bj7A	138	0.01277	a.43.1.3,d.58.18.4	128608,128609
2gpeA	52	0.2091		
1b01A	45	0.3388	a.43.1.3	17458
2cpgA	45	0.4101	a.43.1.3	17455
1p94A	76	1.050	a.43.1.3	94380
2q2kA	70	4.177		
2k29A	53	11.52		
3bqpA	80	14.14		
2z1mA	345	15.96		
2q1sA	377	16.70		
1x93A	55	17.37		
2bsqE	77	18.90	a.43.1.8	129102
2g2bA	150	20.30		
1hssA	124	20.43	a.52.1.2	17819
2an7A	83	22.06		
1n7hA	381	22.47	c.2.1.2	80250
1t2aA	375	23.80	c.2.1.2	99078
1lf7A	182	28.53	b.60.1.1	73878
2z06A	252	28.85		
1tuwA	109	33.48	d.58.4.8	107346
2hjmA	103	35.42		
1qrrA	394	35.78	c.2.1.2	29824
2b69A	343	36.59	c.2.1.2	127974
1pbyA	489	36.92	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
1n69A	81	37.02	a.64.1.3	80118
1icxA	155	39.32	d.129.3.1	71191
1rkxA	357	39.53	c.2.1.2	97631
1ecaA	136	42.11	a.1.1.2	15209
1hpwA	129	43.35	d.24.1.1	61118
2jgpA	520	44.77		
2d7dB	40	45.47		
1bea	127	47.06		
1rpnA	335	48.86	c.2.1.2	97708
1i2cA	404	49.95	c.2.1.2	83666
2a6tA	271	52.02	a.242.1.1,d.113.1.7	126309,126310
1bwsA	321	54.82	c.2.1.2	29812
2rg4A	216	57.89		
3bk6A	188	59.88		
1q0wA	24	60.07	j.105.1.1	95515
2ajtA	500	60.67	b.43.2.2,c.85.1.2	126894,126895
1i24A	404	63.13	c.2.1.2	83663
2ba3A	51	63.73		
1nlwB	76	65.98	a.38.1.1	80634
1udcA	338	66.46	c.2.1.2	29785
1kkoA	413	69.70	c.1.11.2,d.54.1.1	68675,68676
1bsvA	321	69.90	c.2.1.2	29809
1ek6A	348	70.54	c.2.1.2	29800
2qulA	290	74.47		
1u9jA	358	75.05	c.2.1.2	113243
2bllA	345	80.69	c.2.1.2	128733
1ly1A	181	84.01	c.37.1.1	74334
2oxlA	64	84.20		
2pzmA	330	85.50		
1tc3C	51	85.67	a.4.1.2	16025
1nlwA	80	87.61	a.38.1.1	80633
1qmrA	159	88.84	d.129.3.1	41314