# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.01087		
2bj7A	138	0.01200	a.43.1.3,d.58.18.4	128608,128609
2gpeA	52	0.2702		
1b01A	45	0.3776	a.43.1.3	17458
2cpgA	45	0.4954	a.43.1.3	17455
1p94A	76	1.226	a.43.1.3	94380
2q2kA	70	4.998		
2k29A	53	13.59		
2z1mA	345	15.71		
3bqpA	80	18.88		
2g2bA	150	18.90		
2q1sA	377	20.15		
1x93A	55	22.22		
1hssA	124	23.00	a.52.1.2	17819
1lf7A	182	24.00	b.60.1.1	73878
2an7A	83	24.40		
2bsqE	77	25.28	a.43.1.8	129102
2z06A	252	27.60		
1n7hA	381	28.09	c.2.1.2	80250
1t2aA	375	29.47	c.2.1.2	99078
1pbyA	489	32.23	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
2hjmA	103	34.48		
1bea	127	39.21		
1rkxA	357	40.31	c.2.1.2	97631
2b69A	343	42.20	c.2.1.2	127974
1hpwA	129	43.50	d.24.1.1	61118
1n69A	81	44.53	a.64.1.3	80118
2jgpA	520	44.87		
1ecaA	136	45.43	a.1.1.2	15209
1icxA	155	45.68	d.129.3.1	71191
1qrrA	394	47.97	c.2.1.2	29824
2rg4A	216	51.89		
2d7dB	40	53.90		
1i2cA	404	54.35	c.2.1.2	83666
1rpnA	335	56.95	c.2.1.2	97708
1tuwA	109	57.52	d.58.4.8	107346
3bk6A	188	58.60		
1u9jA	358	61.49	c.2.1.2	113243
1q0wA	24	64.21	j.105.1.1	95515
1udcA	338	67.11	c.2.1.2	29785
2ajtA	500	68.77	b.43.2.2,c.85.1.2	126894,126895
2ba3A	51	70.05		
1z7bA	358	73.01	c.2.1.2	124599
2bllA	345	73.56	c.2.1.2	128733
1ek6A	348	75.25	c.2.1.2	29800
2oxlA	64	76.69		
2qulA	290	78.19		
1mylA	53	79.17	a.43.1.1	17427
1qmrA	159	79.49	d.129.3.1	41314
2hjhA	354	79.85		
2a6tA	271	80.05	a.242.1.1,d.113.1.7	126309,126310
1i24A	404	82.42	c.2.1.2	83663
1r6dA	337	83.94	c.2.1.2	97148
1wgmA	98	84.48	g.44.1.2	114616
1bsvA	321	84.58	c.2.1.2	29809
1nlwB	76	85.34	a.38.1.1	80634
1kkoA	413	85.44	c.1.11.2,d.54.1.1	68675,68676
1bwsA	321	86.21	c.2.1.2	29812
1d2fA	390	88.69	c.67.1.3	34411
3by4A	212	89.01		
2pzmA	330	89.68