# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.2545	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.3414		
1p94A	76	1.071	a.43.1.3	94380
2gpeA	52	1.821		
2cpgA	45	5.379	a.43.1.3	17455
1b01A	45	8.238	a.43.1.3	17458
2a6tA	271	16.41	a.242.1.1,d.113.1.7	126309,126310
3bk6A	188	17.44		
1tc3C	51	20.45	a.4.1.2	16025
1um8A	376	21.57	c.37.1.20	99580
2d7eA	105	26.38		
1lf7A	182	27.60	b.60.1.1	73878
2eo4A	149	28.65		
2dobA	83	33.82		
2bsqE	77	35.12	a.43.1.8	129102
3bqpA	80	35.85		
2qulA	290	37.02		
3cnqP	80	37.97		
1exbA	332	39.08	c.1.7.1	28666
2z1mA	345	41.08		
2qypA	91	44.61		
2pzmA	330	45.74		
1n69A	81	51.84	a.64.1.3	80118
1q8fA	313	53.67	c.70.1.1	96203
1do0A	442	54.97	c.37.1.20	32432
1n7hA	381	57.04	c.2.1.2	80250
2yx6A	121	57.59		
1b6fA	159	59.26	d.129.3.1	41316
1qmrA	159	59.45	d.129.3.1	41314
1h75A	81	64.65	c.47.1.1	60716
1yoeA	322	65.49		
2hk0A	309	70.16		
1yxaA	398	72.73		
2q2kA	70	75.26		
1hssA	124	78.41	a.52.1.2	17819
2an7A	83	83.85		
1lkeA	184	85.74	b.60.1.1	84622
1x31B	404	86.15		
1rpnA	335	86.47	c.2.1.2	97708
1gatA	60	87.25	g.39.1.1	45106
1lqaA	346	88.59	c.1.7.1	84674