# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.01155		
2bj7A	138	0.01211	a.43.1.3,d.58.18.4	128608,128609
1p94A	76	0.1673	a.43.1.3	94380
1b01A	45	0.4901	a.43.1.3	17458
2cpgA	45	0.5001	a.43.1.3	17455
2gpeA	52	0.6061		
2q2kA	70	8.667		
2q1sA	377	10.37		
2z1mA	345	17.08		
2bsqE	77	17.91	a.43.1.8	129102
2pzmA	330	23.50		
1n7hA	381	25.06	c.2.1.2	80250
1lf7A	182	27.08	b.60.1.1	73878
3bqpA	80	27.79		
1pbyA	489	29.22	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
1q9jA	422	31.46	c.43.1.2,c.43.1.2	104590,104591
2k29A	53	32.25		
1icxA	155	34.37	d.129.3.1	71191
2c5aA	379	37.40	c.2.1.2	129894
2jgpA	520	39.22		
2g2bA	150	39.48		
1rkxA	357	39.92	c.2.1.2	97631
1z7bA	358	41.27	c.2.1.2	124599
1zg2A	107	44.24		
1aoiB	87	47.49	a.22.1.1	16470
2ba3A	51	47.96		
1n69A	81	48.43	a.64.1.3	80118
2an7A	83	48.48		
2hujA	140	50.40	a.24.26.1	136777
2b69A	343	51.03	c.2.1.2	127974
2z06A	252	51.34		
1i2cA	404	52.73	c.2.1.2	83666
1t2aA	375	53.36	c.2.1.2	99078
1kewA	361	55.16	c.2.1.2	68544
1udcA	338	56.44	c.2.1.2	29785
1nlwB	76	57.30	a.38.1.1	80634
1r6dA	337	58.55	c.2.1.2	97148
2a6tA	271	58.73	a.242.1.1,d.113.1.7	126309,126310
1qynA	153	60.71	d.33.1.1	96597
1u9jA	358	60.87	c.2.1.2	113243
1hssA	124	60.88	a.52.1.2	17819
1q0wA	24	62.56	j.105.1.1	95515
1y8oA	419	66.55		
1rpnA	335	69.12	c.2.1.2	97708
2bllA	345	70.87	c.2.1.2	128733
1ek6A	348	73.00	c.2.1.2	29800
1bxkA	355	73.66	c.2.1.2	29803
1qrrA	394	74.94	c.2.1.2	29824
1a0iA	348	75.84	b.40.4.6,d.142.2.1	25363,41577
1tc3C	51	78.57	a.4.1.2	16025
2hjmA	103	79.88		
1qmrA	159	81.83	d.129.3.1	41314
1bwsA	321	81.89	c.2.1.2	29812
1kkoA	413	83.15	c.1.11.2,d.54.1.1	68675,68676
3bk6A	188	83.16		
1wy6A	172	83.84	a.118.20.1	121432
1zin	217	84.96		
1omrA	201	88.31	a.39.1.5	93349
2rg4A	216	89.12