# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ca9A 148 0.001110 2bj7A 138 0.003710 a.43.1.3,d.58.18.4 128608,128609 2gpeA 52 0.2808 2cpgA 45 0.2915 a.43.1.3 17455 1b01A 45 0.3195 a.43.1.3 17458 1dfaA 454 0.7815 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1zkcA 197 1.257 b.62.1.1 125182 1p94A 76 1.531 a.43.1.3 94380 2q2kA 70 2.848 2gu3A 136 3.297 2g2bA 150 4.100 1bsvA 321 4.715 c.2.1.2 29809 2i57A 438 6.172 2eu8A 216 6.251 2c5aA 379 6.258 c.2.1.2 129894 2hi2A 158 6.283 2b5tI 432 7.110 e.1.1.1 127905 2fwhA 134 8.093 c.47.1.1 134242 2cmtA 172 8.233 2bitX 165 8.894 b.62.1.1 128590 2z1mA 345 10.14 1lf7A 182 10.77 b.60.1.1 73878 1dgsA 667 10.80 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2z06A 252 11.81 1z7bA 358 12.53 c.2.1.2 124599 1bwsA 321 12.76 c.2.1.2 29812 1r6dA 337 13.28 c.2.1.2 97148 3bqpA 80 14.22 1e6uA 321 15.06 c.2.1.2 29805 1lopA 164 16.69 b.62.1.1 27510 1n69A 81 17.42 a.64.1.3 80118 2bsqE 77 17.54 a.43.1.8 129102 1wy6A 172 17.72 a.118.20.1 121432 1exrA 148 18.83 a.39.1.5 17299 1umpA 631 19.31 a.102.4.2,a.102.4.2 99619,99620 2a2nA 176 19.82 b.62.1.1 126041 1mxgA 435 19.92 b.71.1.1,c.1.8.1 85193,85194 2pnfA 248 20.30 2iwbA 246 20.43 1awqA 164 21.54 b.62.1.1 27461 1h0pA 182 23.28 b.62.1.1 76450 1do0A 442 24.73 c.37.1.20 32432 1lniA 96 25.68 d.1.1.2 74046 2k29A 53 28.94 2z6wA 165 29.54 1bn7A 294 29.79 c.69.1.8 34677 1oc2A 348 31.43 c.2.1.2 92765 1dseA 292 31.56 a.93.1.1 59130 2eo4A 149 31.82 2hujA 140 34.70 a.24.26.1 136777 2hqsC 118 36.05 d.79.7.1 136666 1pjjA 271 36.16 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1e7rA 321 37.05 c.2.1.2 29808 1ggzA 148 37.37 a.39.1.5 70176 1rkxA 357 38.20 c.2.1.2 97631 2gfpA 375 38.23 1gegA 256 39.85 c.2.1.2 29888 1qpaA 345 40.92 a.93.1.1 18585 1hssA 124 41.74 a.52.1.2 17819 2b69A 343 41.76 c.2.1.2 127974 1y8cA 246 43.19 c.66.1.43 116563 1yndA 165 44.43 b.62.1.1 123721 1nlwB 76 44.56 a.38.1.1 80634 1dhpA 292 44.90 c.1.10.1 29097 1aoiB 87 45.76 a.22.1.1 16470 1xo7A 166 46.14 b.62.1.1 115694 1urfA 81 48.32 a.2.6.1 99827 1ymtA 246 48.35 2cfeA 162 50.88 b.62.1.1 130375 2uwxA 494 55.21 e.3.1.1 140002 1qo7A 394 57.35 c.69.1.11 34697 1vl1A 232 60.32 c.124.1.1 108707 3by4A 212 60.38 1kx5B 102 61.64 a.22.1.1 77594 1zg2A 107 62.25 1iyoA 262 62.77 e.3.1.1 76970 1x93A 55 62.83 1h8eG 272 63.17 c.49.2.1 60756 2bwjA 199 63.74 1d2fA 390 64.49 c.67.1.3 34411 2an7A 83 64.57 1u9jA 358 65.18 c.2.1.2 113243 2om6A 235 65.62 1jeqA 609 65.98 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1rsoA 60 66.88 a.194.1.1 97811 1ja9A 274 68.07 c.2.1.2 62817 1qynA 153 68.11 d.33.1.1 96597 1atg 231 68.20 1reqB 637 68.55 c.1.19.1,c.23.6.1 29621,31248 2z99A 219 69.66 1zin 217 70.48 1mtzA 293 70.65 c.69.1.7 79467 2v8hA 474 72.32 2hmcA 344 73.72 2h4aA 325 73.72 3crrA 323 74.28 2gqpA 236 77.22 d.122.1.1 135513 2hjmA 103 77.66 1uasA 362 78.17 b.71.1.1,c.1.8.1 88388,88389 2dt4A 143 79.98 1iuhA 198 80.07 d.61.1.2 83711 2ba3A 51 81.04 2q1sA 377 81.13 2pnwA 380 82.34 1ot1A 686 85.29 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1qqtA 551 85.92 a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1ecaA 136 86.04 a.1.1.2 15209 2iorA 235 86.51 1nlwA 80 88.90 a.38.1.1 80633 7taa 478 89.31 1ak2A 233 89.40 c.37.1.1,g.41.2.1 31894,45195 1m1cA 680 89.91 e.42.1.1 78395 3be7A 408 89.97