# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.007802		
2bj7A	138	0.01095	a.43.1.3,d.58.18.4	128608,128609
1p94A	76	0.1810	a.43.1.3	94380
2cpgA	45	0.4517	a.43.1.3	17455
1b01A	45	0.4866	a.43.1.3	17458
2gpeA	52	0.6062		
2q2kA	70	6.942		
2q1sA	377	10.75		
2z1mA	345	16.95		
2bsqE	77	17.54	a.43.1.8	129102
2pzmA	330	19.98		
1lf7A	182	26.32	b.60.1.1	73878
2a6tA	271	28.55	a.242.1.1,d.113.1.7	126309,126310
1pbyA	489	30.40	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
2g2bA	150	30.57		
2k29A	53	35.69		
1icxA	155	36.88	d.129.3.1	71191
1n7hA	381	37.65	c.2.1.2	80250
1q9jA	422	40.39	c.43.1.2,c.43.1.2	104590,104591
1hssA	124	40.43	a.52.1.2	17819
1rkxA	357	45.70	c.2.1.2	97631
2z06A	252	46.81		
3bqpA	80	48.24		
1z7bA	358	48.29	c.2.1.2	124599
2c5aA	379	50.90	c.2.1.2	129894
1kewA	361	54.45	c.2.1.2	68544
1t2aA	375	55.16	c.2.1.2	99078
2an7A	83	55.78		
1udcA	338	58.06	c.2.1.2	29785
1aoiB	87	59.26	a.22.1.1	16470
2b69A	343	59.43	c.2.1.2	127974
2jgpA	520	59.83		
1q0wA	24	59.89	j.105.1.1	95515
1omrA	201	64.89	a.39.1.5	93349
2ajtA	500	65.24	b.43.2.2,c.85.1.2	126894,126895
1n69A	81	65.39	a.64.1.3	80118
1zin	217	65.39		
1zg2A	107	65.41		
1i2cA	404	66.05	c.2.1.2	83666
2ba3A	51	66.40		
1r6dA	337	67.20	c.2.1.2	97148
1nlwB	76	68.03	a.38.1.1	80634
2hujA	140	70.98	a.24.26.1	136777
1hpwA	129	71.11	d.24.1.1	61118
1qmrA	159	71.46	d.129.3.1	41314
2eu8A	216	72.17		
1rpnA	335	72.69	c.2.1.2	97708
1ek6A	348	73.36	c.2.1.2	29800
1qynA	153	75.24	d.33.1.1	96597
3bk6A	188	75.73		
1u9jA	358	76.58	c.2.1.2	113243
2raaA	204	77.86		
1exbA	332	80.25	c.1.7.1	28666
1bxkA	355	80.98	c.2.1.2	29803
2bllA	345	82.15	c.2.1.2	128733
1bwsA	321	82.40	c.2.1.2	29812
1bv1	159	84.08		
2rg4A	216	84.85		
1kkoA	413	85.37	c.1.11.2,d.54.1.1	68675,68676
1u53A	196	85.56		
1bea	127	89.78