# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.01567		
2bj7A	138	0.01643	a.43.1.3,d.58.18.4	128608,128609
1p94A	76	0.2885	a.43.1.3	94380
2gpeA	52	0.4104		
1b01A	45	0.4509	a.43.1.3	17458
2cpgA	45	0.4634	a.43.1.3	17455
2q2kA	70	3.498		
2q1sA	377	13.27		
2z1mA	345	15.56		
3bqpA	80	17.41		
2an7A	83	20.35		
1x93A	55	21.99		
1tuwA	109	22.61	d.58.4.8	107346
2bsqE	77	26.63	a.43.1.8	129102
1lf7A	182	27.52	b.60.1.1	73878
1icxA	155	27.64	d.129.3.1	71191
2g2bA	150	28.85		
2k29A	53	32.54		
1pbyA	489	34.33	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
2qypA	91	35.64		
1hssA	124	37.96	a.52.1.2	17819
1n7hA	381	38.55	c.2.1.2	80250
1rkxA	357	40.31	c.2.1.2	97631
2z06A	252	42.37		
1bea	127	43.18		
1t2aA	375	43.63	c.2.1.2	99078
2pzmA	330	45.13		
1n69A	81	46.18	a.64.1.3	80118
1udcA	338	46.20	c.2.1.2	29785
2a6tA	271	46.40	a.242.1.1,d.113.1.7	126309,126310
1kewA	361	48.48	c.2.1.2	68544
3bk6A	188	49.57		
1hpwA	129	51.51	d.24.1.1	61118
2az4A	429	59.56	d.157.1.10	127597
3cjeA	167	60.61		
1z7bA	358	62.91	c.2.1.2	124599
1um8A	376	63.66	c.37.1.20	99580
2c5aA	379	69.40	c.2.1.2	129894
1kkoA	413	70.00	c.1.11.2,d.54.1.1	68675,68676
2bllA	345	73.89	c.2.1.2	128733
1qo7A	394	76.24	c.69.1.11	34697
2pil	159	77.16		
1rpnA	335	79.51	c.2.1.2	97708
2hjmA	103	81.44		
1ek6A	348	81.57	c.2.1.2	29800
2jgpA	520	83.03		
1i2cA	404	85.68	c.2.1.2	83666
1qrrA	394	86.28	c.2.1.2	29824
1u9jA	358	87.65	c.2.1.2	113243
1nlwA	80	88.37	a.38.1.1	80633
2raaA	204	88.94		
2rg4A	216	89.76