# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.006037 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.008031 2gpeA 52 0.1894 1p94A 76 0.2710 a.43.1.3 94380 2cpgA 45 0.2847 a.43.1.3 17455 1b01A 45 0.3006 a.43.1.3 17458 2q2kA 70 4.336 2z1mA 345 10.33 3bqpA 80 11.15 2an7A 83 11.90 2q1sA 377 13.17 2k29A 53 17.48 1pbyA 489 18.26 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1tuwA 109 22.89 d.58.4.8 107346 1lf7A 182 23.24 b.60.1.1 73878 1icxA 155 24.12 d.129.3.1 71191 1n7hA 381 26.58 c.2.1.2 80250 2bsqE 77 26.84 a.43.1.8 129102 1rkxA 357 27.28 c.2.1.2 97631 2g2bA 150 27.29 1x93A 55 27.97 1n69A 81 28.41 a.64.1.3 80118 2jgpA 520 34.65 1udcA 338 34.70 c.2.1.2 29785 1hssA 124 37.29 a.52.1.2 17819 1t2aA 375 37.45 c.2.1.2 99078 1hpwA 129 39.21 d.24.1.1 61118 1bea 127 42.84 3bk6A 188 44.20 2pzmA 330 44.25 1i2cA 404 44.30 c.2.1.2 83666 1qveA 126 44.69 d.24.1.1 104594 2bllA 345 51.96 c.2.1.2 128733 2z06A 252 55.09 1ltqA 301 55.10 c.108.1.9,c.37.1.1 78208,78209 2hjmA 103 58.14 2pil 159 58.71 2rg4A 216 58.84 1z7bA 358 60.79 c.2.1.2 124599 1qrrA 394 62.19 c.2.1.2 29824 1r6dA 337 63.84 c.2.1.2 97148 1ecaA 136 63.91 a.1.1.2 15209 1u9jA 358 64.31 c.2.1.2 113243 2c5aA 379 65.57 c.2.1.2 129894 2hjhA 354 66.05 1ek6A 348 67.96 c.2.1.2 29800 2d7eA 105 68.67 2ba3A 51 69.25 1tc3C 51 71.10 a.4.1.2 16025 1rpnA 335 73.00 c.2.1.2 97708 1svbA 395 78.27 b.1.18.4,f.10.1.1 21814,43827 1q0wA 24 80.70 j.105.1.1 95515 2b69A 343 81.16 c.2.1.2 127974 1b55A 169 82.73 b.55.1.1 26963 2a6tA 271 84.18 a.242.1.1,d.113.1.7 126309,126310 1kkoA 413 85.09 c.1.11.2,d.54.1.1 68675,68676 1u53A 196 85.12 1kewA 361 85.47 c.2.1.2 68544 1q9jA 422 88.83 c.43.1.2,c.43.1.2 104590,104591