# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.004072	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.01160		
1p94A	76	0.07335	a.43.1.3	94380
2gpeA	52	0.1506		
2cpgA	45	0.2045	a.43.1.3	17455
1b01A	45	0.2255	a.43.1.3	17458
2q2kA	70	4.005		
2an7A	83	13.04		
2bsqE	77	13.14	a.43.1.8	129102
3bqpA	80	13.59		
2k29A	53	14.12		
1x93A	55	14.25		
2q1sA	377	16.12		
2z1mA	345	18.35		
1icxA	155	18.65	d.129.3.1	71191
1lf7A	182	22.46	b.60.1.1	73878
2jgpA	520	23.62		
1tuwA	109	27.18	d.58.4.8	107346
2g2bA	150	28.27		
2qypA	91	28.37		
1hssA	124	37.17	a.52.1.2	17819
1q9jA	422	38.34	c.43.1.2,c.43.1.2	104590,104591
2b69A	343	38.58	c.2.1.2	127974
3bk6A	188	39.04		
1n69A	81	40.69	a.64.1.3	80118
2hjmA	103	41.44		
2a6tA	271	41.48	a.242.1.1,d.113.1.7	126309,126310
1t2aA	375	42.67	c.2.1.2	99078
1pbyA	489	44.62	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
2bllA	345	47.14	c.2.1.2	128733
1udcA	338	50.83	c.2.1.2	29785
2ba3A	51	55.47		
1u9jA	358	56.51	c.2.1.2	113243
1n7hA	381	57.59	c.2.1.2	80250
1a0iA	348	57.87	b.40.4.6,d.142.2.1	25363,41577
1kewA	361	58.67	c.2.1.2	68544
1rkxA	357	59.42	c.2.1.2	97631
1z7bA	358	62.34	c.2.1.2	124599
1ltqA	301	63.92	c.108.1.9,c.37.1.1	78208,78209
1hpwA	129	64.70	d.24.1.1	61118
1nlwB	76	66.02	a.38.1.1	80634
1svbA	395	66.36	b.1.18.4,f.10.1.1	21814,43827
2z06A	252	66.97		
1rpnA	335	67.58	c.2.1.2	97708
2c5aA	379	67.91	c.2.1.2	129894
1qmrA	159	69.77	d.129.3.1	41314
1qveA	126	70.66	d.24.1.1	104594
1u53A	196	71.49		
2rg4A	216	71.91		
1bv1	159	74.37		
1bea	127	75.16		
1ecaA	136	75.20	a.1.1.2	15209
3cjeA	167	75.68		
1b6fA	159	78.44	d.129.3.1	41316
2hjhA	354	79.42		
2hi2A	158	79.59		
1kkoA	413	79.94	c.1.11.2,d.54.1.1	68675,68676
1tc3C	51	82.69	a.4.1.2	16025
1b55A	169	84.31	b.55.1.1	26963
1qrrA	394	84.60	c.2.1.2	29824
1ek6A	348	86.11	c.2.1.2	29800
1aoiB	87	87.59	a.22.1.1	16470