# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.8025	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	1.512		
2gpeA	52	6.242		
2z1mA	345	13.34		
1p94A	76	17.07	a.43.1.3	94380
1n7hA	381	19.07	c.2.1.2	80250
3bqpA	80	19.80		
1b01A	45	22.86	a.43.1.3	17458
2cpgA	45	22.86	a.43.1.3	17455
2qypA	91	26.75		
1tuwA	109	27.00	d.58.4.8	107346
1e3aB	560	27.84		
1kewA	361	29.72	c.2.1.2	68544
1t2aA	375	30.78	c.2.1.2	99078
1y8oA	419	33.71		
2pzmA	330	34.95		
2dobA	83	40.29		
2rg4A	216	42.55		
2p5yA	311	42.96		
2q2kA	70	54.01		
1i2cA	404	56.65	c.2.1.2	83666
1lf7A	182	58.76	b.60.1.1	73878
1i24A	404	59.64	c.2.1.2	83663
1t8sA	484	60.50	c.56.2.1	106679
1rpnA	335	60.73	c.2.1.2	97708
1icxA	155	63.79	d.129.3.1	71191
1bsvA	321	65.11	c.2.1.2	29809
1r6dA	337	65.16	c.2.1.2	97148
2b69A	343	65.79	c.2.1.2	127974
1ecaA	136	65.95	a.1.1.2	15209
1bwsA	321	67.56	c.2.1.2	29812
2vojA	371	68.60		
1m12A	84	70.80	a.64.1.1	84745
1q9jA	422	71.01	c.43.1.2,c.43.1.2	104590,104591
1or3A	165	71.81	a.24.1.1	16522
1n69A	81	73.68	a.64.1.3	80118
2hmvA	144	74.22	c.2.1.9	136615
1dixA	208	76.97	d.124.1.1	41122
1gk9B	557	78.09		
2a6tA	271	80.89	a.242.1.1,d.113.1.7	126309,126310
2pil	159	81.33		
2hi2A	158	83.94		
1usuB	170	84.10	d.83.2.1	99886
3by4A	212	86.59		
3cnqP	80	86.78		
1bxkA	355	87.05	c.2.1.2	29803
1x31B	404	87.32