# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.06962 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.7876 2d7eA 105 1.051 2gpeA 52 1.216 1p94A 76 2.457 a.43.1.3 94380 1yxaA 398 2.664 2qk2A 242 5.371 1tc3C 51 6.506 a.4.1.2 16025 1vh4A 435 7.608 b.80.6.1 100640 2bsqE 77 8.012 a.43.1.8 129102 1umdA 367 11.19 c.36.1.11 99599 2h4pA 394 15.97 1b01A 45 16.28 a.43.1.3 17458 2bfdA 400 17.65 2ol2A 395 18.02 1q2wA 308 18.30 b.47.1.4 88355 2h2zA 306 19.56 1jjoC 261 19.80 2cpgA 45 20.69 a.43.1.3 17455 1oxkB 134 21.08 c.23.1.1 93691 1x9zA 188 21.60 d.292.1.1 115019 2gagB 405 21.71 1hcrA 52 21.96 a.4.1.2 16020 2r25B 133 22.68 2d5xA 141 23.11 a.1.1.2 131282 2fyxA 143 23.66 d.58.57.1 134411 1h7mA 102 25.91 d.79.3.1 83485 1ys7A 233 26.12 a.4.6.1,c.23.1.1 123961,123962 2amdA 311 26.19 3b9fI 395 26.20 1sekA 378 26.99 e.1.1.1 42675 2pefA 373 27.71 1yoeA 322 28.02 2v95A 371 28.10 1qs0A 407 28.28 c.36.1.11 31829 2k29A 53 28.69 1xtyA 120 29.64 1x93A 55 31.38 1zcjA 463 34.32 1jrrA 382 36.31 e.1.1.1 63256 2an7A 83 36.54 1q79A 514 37.48 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 2vp4A 230 37.93 2o6lA 170 38.02 1bazA 53 38.12 a.43.1.1 17421 1gt1A 159 38.95 b.60.1.1 90515 1as4A 341 39.36 e.1.1.1 42623 1hleA 345 41.55 e.1.1.1 42618 1mykA 53 42.78 a.43.1.1 17425 1q7sA 117 43.05 c.131.1.1 96055 1ig3A 263 43.40 b.82.6.1,c.100.1.1 62358,62359 1vb3A 428 43.65 c.79.1.1 119942 1imvA 398 43.95 e.1.1.1 62591 1cg5B 141 45.32 a.1.1.2 15585 3chy 128 47.26 1y0vH 146 47.79 1o4sA 389 50.19 c.67.1.1 86620 2bo1A 101 50.31 1e3yA 104 50.58 a.77.1.2 18426 1jvbA 347 52.86 b.35.1.2,c.2.1.1 77181,77182 3c3mA 138 54.17 2gdmA 153 54.30 a.1.1.2 15212 1bdtA 53 54.59 a.43.1.1 17433 3bpzA 202 55.52 2masA 314 55.53 c.70.1.1 34810 1wn2A 121 55.63 2ijeS 240 56.58 2achA 360 56.96 e.1.1.1 42626 1mylA 53 57.20 a.43.1.1 17427 2yx6A 121 57.46 1zndA 174 58.51 b.60.1.1 125380 2arrA 382 58.78 1um8A 376 60.99 c.37.1.20 99580 2oqrA 230 62.69 2ba3A 51 63.50 1hssA 124 64.28 a.52.1.2 17819 1tfeA 145 65.28 d.43.1.1 38680 1u14A 172 65.57 c.51.4.3 107579 1p5zB 263 65.93 c.37.1.1 87815 2prrA 197 66.61 3ygsP 97 66.91 a.77.1.3 18435 1aoa 275 66.95 2yviA 111 67.50 2g9zA 348 69.43 2b5tI 432 71.43 e.1.1.1 127905 1u8tA 129 72.98 c.23.1.1 113192 1br1B 150 73.40 a.39.1.5 17309 1ekrA 161 73.85 d.58.21.1 39380 1ecaA 136 76.02 a.1.1.2 15209 1mb3A 124 77.23 c.23.1.1 78907 2je6B 250 79.54 1i06A 180 80.03 b.60.1.1 27131 1jmoA 480 80.15 e.1.1.1 77138 1zynA 202 81.13 c.47.1.2,c.47.1.2 125838,125839 1of1A 376 82.28 c.37.1.1 103924 2plnA 137 82.37 1tfe 145 82.40 1kl9A 182 82.97 a.60.14.1,b.40.4.5 111574,111575 1l0bA 229 83.99 c.15.1.3,c.15.1.3 73391,73392 1b33A 160 84.07 a.1.1.3 15649 1gcvB 136 84.13 a.1.1.2 15589 2qsfX 171 84.88 1vgjA 184 84.97 1ab6A 125 85.64 c.23.1.1 31054 1x31B 404 85.82 1b6fA 159 86.65 d.129.3.1 41316 1oe0A 230 89.13 c.37.1.1 92788 2pl1A 121 89.89