# TARGET T0474 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0474.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.7804 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.069 0.054 0.009 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.089 0.013 0.084 0.669 2 N 0.045 0.077 0.004 0.001 0.003 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.109 0.015 0.139 0.593 3 S 0.112 0.103 0.007 0.001 0.002 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.130 0.016 0.086 0.532 4 L 0.063 0.237 0.006 0.001 0.001 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.138 0.014 0.153 0.379 5 A 0.106 0.217 0.007 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.103 0.036 0.124 0.399 6 G 0.115 0.295 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.115 0.023 0.089 0.341 7 I 0.082 0.373 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.163 0.015 0.082 0.254 8 D 0.044 0.375 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.225 0.020 0.078 0.247 9 M 0.076 0.369 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.266 0.019 0.057 0.200 10 G 0.063 0.244 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.412 0.020 0.075 0.174 11 R 0.071 0.170 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.438 0.027 0.057 0.220 12 I 0.041 0.120 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.525 0.014 0.029 0.252 13 L 0.022 0.087 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.002 0.620 0.010 0.036 0.199 14 L 0.010 0.055 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.001 0.734 0.006 0.018 0.159 15 D 0.021 0.031 0.012 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.005 0.001 0.003 0.003 0.009 0.005 0.471 0.014 0.129 0.285 16 L 0.026 0.014 0.008 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.555 0.006 0.085 0.297 17 S 0.010 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.004 0.564 0.365 18 N 0.036 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.014 0.150 0.756 19 E 0.012 0.033 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.332 0.618 20 V 0.034 0.064 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.639 0.251 21 I 0.019 0.924 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.049 22 K 0.015 0.956 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.024 23 Q 0.016 0.940 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.037 24 L 0.028 0.936 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.025 25 D 0.024 0.907 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.004 0.051 26 D 0.031 0.773 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.019 0.016 0.150 27 L 0.070 0.738 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.016 0.150 28 E 0.052 0.788 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.025 0.121 29 V 0.043 0.843 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.017 0.077 30 Q 0.093 0.794 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.021 0.007 0.076 31 R 0.118 0.756 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.037 0.004 0.074 32 N 0.307 0.295 0.085 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.113 0.028 0.165 33 L 0.265 0.073 0.347 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.019 0.052 0.220 34 P 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.966 35 R 0.038 0.026 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.003 0.065 0.803 36 A 0.016 0.116 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.120 0.738 37 D 0.078 0.175 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.354 0.385 38 L 0.010 0.887 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.091 39 L 0.012 0.937 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.042 40 R 0.003 0.973 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.020 41 E 0.004 0.980 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.014 42 A 0.003 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 43 V 0.004 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 44 D 0.003 0.976 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.014 45 Q 0.015 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.021 46 Y 0.049 0.927 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.016 47 L 0.018 0.925 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.007 0.028 48 I 0.033 0.846 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.016 0.012 0.070 49 N 0.144 0.699 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.047 0.005 0.097 50 Q 0.247 0.519 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.062 0.006 0.143 51 S 0.082 0.234 0.101 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.043 0.067 0.453 52 Q 0.041 0.073 0.067 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.016 0.101 0.668 53 T 0.058 0.080 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.010 0.170 0.628 54 A 0.141 0.162 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.013 0.067 0.527 55 R 0.069 0.365 0.008 0.001 0.002 0.002 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.085 0.011 0.083 0.359 56 T 0.138 0.271 0.008 0.001 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.005 0.005 0.002 0.001 0.065 0.031 0.081 0.382 57 S 0.250 0.241 0.010 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.048 0.028 0.309 58 V 0.177 0.205 0.027 0.002 0.001 0.001 0.001 0.001 0.013 0.004 0.002 0.001 0.001 0.001 0.002 0.002 0.135 0.022 0.069 0.334 59 P 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.007 0.981 60 G 0.034 0.019 0.005 0.002 0.002 0.001 0.002 0.002 0.001 0.001 0.003 0.001 0.008 0.006 0.006 0.002 0.139 0.020 0.086 0.662 61 I 0.553 0.026 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.067 0.012 0.045 0.269 62 W 0.046 0.121 0.004 0.003 0.003 0.001 0.002 0.002 0.017 0.008 0.003 0.003 0.006 0.010 0.009 0.006 0.273 0.008 0.085 0.390 63 Q 0.052 0.084 0.004 0.001 0.009 0.004 0.004 0.003 0.008 0.002 0.004 0.004 0.005 0.008 0.004 0.003 0.232 0.017 0.077 0.475 64 G 0.082 0.041 0.003 0.001 0.001 0.004 0.002 0.001 0.009 0.003 0.007 0.004 0.005 0.006 0.004 0.004 0.108 0.029 0.095 0.594 65 C 0.231 0.017 0.032 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.006 0.001 0.003 0.002 0.001 0.001 0.073 0.027 0.120 0.481 66 E 0.030 0.021 0.005 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.007 0.134 0.743 67 E 0.045 0.017 0.005 0.001 0.007 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.011 0.077 0.770 68 D 0.074 0.069 0.004 0.001 0.003 0.006 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.015 0.131 0.577 69 G 0.267 0.044 0.008 0.001 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.049 0.082 0.444 70 V 0.197 0.067 0.052 0.002 0.002 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.014 0.235 0.337 71 E 0.014 0.043 0.004 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.190 0.005 0.158 0.574 72 Y 0.029 0.100 0.015 0.001 0.013 0.015 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.136 0.007 0.108 0.556 73 Q 0.041 0.289 0.005 0.001 0.001 0.002 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.313 0.007 0.069 0.264 74 R 0.031 0.386 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.004 0.047 0.459 75 K 0.036 0.656 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.007 0.029 0.215 76 L 0.055 0.794 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.007 0.020 0.101 77 R 0.043 0.841 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.007 0.010 0.074 78 E 0.046 0.811 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.014 0.009 0.103 79 E 0.162 0.661 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.042 0.008 0.108 80 W 0.156 0.647 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.029 0.013 0.117