# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.007037	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.01141		
2cpgA	45	0.06792	a.43.1.3	17455
2gpeA	52	0.2254		
1p94A	76	0.2810	a.43.1.3	94380
2an7A	83	4.615		
2q2kA	70	5.054		
2k29A	53	6.571		
2bsqE	77	6.833	a.43.1.8	129102
2d7eA	105	8.398		
2ba3A	51	12.74		
1ml8A	134	13.22	d.227.1.2	85013
1uz3A	102	13.35		
1yoeA	322	14.03		
1x93A	55	14.05		
2vebA	195	15.56		
2c5aA	379	21.93	c.2.1.2	129894
1vdlA	80	24.20	a.5.2.1	108528
1d2fA	390	30.54	c.67.1.3	34411
3c8cA	240	30.98		
2ds2B	72	35.49		
2masA	314	36.59	c.70.1.1	34810
2e8eA	132	38.19		
2jgpA	520	40.02		
1l5aA	436	47.07	c.43.1.2,c.43.1.2	75923,75924
2amdA	311	48.37		
3beeA	93	50.70		
2ns5A	85	51.80		
2rcyA	262	53.17		
2h2zA	306	54.77		
1n69A	81	60.89	a.64.1.3	80118
1a53	247	62.25		
1sur	215	65.03		
1xahA	354	71.66		
1ic8A	194	72.98	a.4.1.1,a.35.1.1	76740,76741
1udcA	338	73.13	c.2.1.2	29785
1gqnA	252	75.64	c.1.10.1	90514
2v9dA	343	79.62		
3b5vA	248	80.07		
1m12A	84	81.20	a.64.1.1	84745
1k3xA	262	81.53	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2e2eA	177	88.08		
1tdzA	272	88.10	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1svmA	377	88.73	c.37.1.20	112126
2pgsA	451	89.24