# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.002653	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.003018		
2cpgA	45	0.04866	a.43.1.3	17455
2gpeA	52	0.1753		
1p94A	76	0.2276	a.43.1.3	94380
2an7A	83	1.570		
2k29A	53	2.646		
2q2kA	70	2.746		
1x93A	55	5.100		
2bsqE	77	6.073	a.43.1.8	129102
2d7eA	105	8.958		
1vdlA	80	16.76	a.5.2.1	108528
2vebA	195	17.07		
1yoeA	322	17.26		
1ml8A	134	17.41	d.227.1.2	85013
3cihA	739	18.20		
2ba3A	51	20.24		
1uz3A	102	27.77		
2c5aA	379	28.14	c.2.1.2	129894
3c8cA	240	28.73		
2e8eA	132	31.60		
2vqeT	106	37.51		
1ic8A	194	37.82	a.4.1.1,a.35.1.1	76740,76741
1d2fA	390	40.33	c.67.1.3	34411
2jgpA	520	41.52		
2masA	314	44.72	c.70.1.1	34810
3beeA	93	45.76		
2dyjA	95	48.29		
3bk6A	188	52.94		
2gs4A	166	54.16	a.25.1.4	135575
1l5aA	436	54.54	c.43.1.2,c.43.1.2	75923,75924
2ds2B	72	54.76		
1sur	215	54.93		
2rcyA	262	55.00		
2jobA	102	57.38		
1k3xA	262	57.83	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
3bpzA	202	59.10		
2hujA	140	61.55	a.24.26.1	136777
2ns5A	85	61.91		
3bqpA	80	63.55		
1w7jA	795	69.44	b.34.3.1,c.37.1.9	120688,120689
1q8fA	313	71.60	c.70.1.1	96203
2e2eA	177	71.70		
1m12A	84	72.31	a.64.1.1	84745
2qp2A	511	73.99		
1n69A	81	74.34	a.64.1.3	80118
2amdA	311	78.02		
1svmA	377	79.93	c.37.1.20	112126
2pgsA	451	83.01		
2i3fA	224	83.12		
2c8eE	211	83.41		
3b5vA	248	88.94		
1kpfA	125	89.45	d.13.1.1	37507