# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.001906		
2bj7A	138	0.002063	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.02971	a.43.1.3	17455
2gpeA	52	0.09464		
1p94A	76	0.2690	a.43.1.3	94380
2k29A	53	0.7713		
2an7A	83	1.019		
2d7eA	105	3.898		
2bsqE	77	4.103	a.43.1.8	129102
2ba3A	51	5.469		
2jgpA	520	8.284		
1uz3A	102	8.531		
2q2kA	70	9.848		
1x93A	55	11.08		
1l5aA	436	11.19	c.43.1.2,c.43.1.2	75923,75924
2c5aA	379	20.44	c.2.1.2	129894
1yoeA	322	22.93		
3cihA	739	25.96		
2vebA	195	29.51		
1sw2A	275	31.16	c.94.1.1	106064
1q9jA	422	31.77	c.43.1.2,c.43.1.2	104590,104591
1vdlA	80	34.43	a.5.2.1	108528
2e2eA	177	37.18		
2h2zA	306	38.52		
2amdA	311	41.06		
2v9dA	343	41.56		
1m12A	84	42.02	a.64.1.1	84745
2o09A	189	42.71		
1tr8A	102	43.89		
2qhoB	53	44.14		
3c8cA	240	44.28		
2z1mA	345	46.38		
1a53	247	47.02		
1wvgA	359	47.70	c.2.1.2	121339
2c8eE	211	48.17		
2rcyA	262	48.22		
1a3yA	149	50.69	b.60.1.1	27110
1oc2A	348	51.42	c.2.1.2	92765
3b5vA	248	53.64		
1wm3A	72	53.75	d.15.1.1	114736
2ns5A	85	54.70		
3bpzA	202	55.33		
2hlvA	160	55.95		
1k3xA	262	58.70	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
3beeA	93	58.77		
1kewA	361	59.51	c.2.1.2	68544
1svmA	377	60.30	c.37.1.20	112126
1y9bA	90	61.50	a.43.1.9	122777
1udcA	338	61.81	c.2.1.2	29785
2ef8A	84	61.89		
1sur	215	63.56		
1dzkA	157	65.46	b.60.1.1	27096
1gqnA	252	71.35	c.1.10.1	90514
2masA	314	71.70	c.70.1.1	34810
1cmcA	104	71.96	a.43.1.5	17462
2ra6A	166	73.90		
2ckiA	262	75.58		
1ctf	74	79.91