# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.004363		
2bj7A	138	0.004794	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1040	a.43.1.3	17455
2gpeA	52	0.3627		
1p94A	76	0.6683	a.43.1.3	94380
2k29A	53	3.497		
2q2kA	70	4.357		
2an7A	83	6.635		
1yoeA	322	11.54		
1x93A	55	15.43		
2ds2B	72	16.27		
1d2fA	390	20.02	c.67.1.3	34411
1uz3A	102	22.63		
1vdlA	80	28.17	a.5.2.1	108528
2ba3A	51	29.70		
2masA	314	31.82	c.70.1.1	34810
2d7eA	105	32.27		
1wj6A	101	32.56	d.15.2.2	114693
2bsqE	77	37.22	a.43.1.8	129102
2c5aA	379	37.64	c.2.1.2	129894
2vebA	195	38.12		
1n69A	81	40.36	a.64.1.3	80118
2c40A	312	46.14		
2gs4A	166	52.01	a.25.1.4	135575
2c0nA	203	54.44		
2jobA	102	59.66		
2e2eA	177	59.77		
1a53	247	59.84		
2ns5A	85	62.46		
3beeA	93	62.54		
3cqyA	370	64.88		
2rcyA	262	69.95		
2vqeT	106	70.82		
3b5vA	248	71.33		
1gaiA	472	73.76	a.102.1.1	18819
1sur	215	74.09		
1m2kA	249	76.93	c.31.1.5	84754
3c8cA	240	79.48		
1ml8A	134	79.52	d.227.1.2	85013
1f60B	94	83.40	d.58.12.1	39307
1t1jA	125	85.07	c.23.14.2	106249
2axkA	38	86.30		
1nkpA	88	88.88	a.38.1.1	80573
2qp2A	511	89.07		
2jgpA	520	89.50