# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.06872		
2bj7A	138	0.1294	a.43.1.3,d.58.18.4	128608,128609
2gpeA	52	0.6621		
2cpgA	45	0.7040	a.43.1.3	17455
1p94A	76	2.983	a.43.1.3	94380
1yoeA	322	4.920		
1uz3A	102	4.942		
2bsqE	77	5.259	a.43.1.8	129102
2d7eA	105	8.828		
2masA	314	8.940	c.70.1.1	34810
2an7A	83	16.82		
2ds2B	72	20.12		
1k3xA	262	21.16	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2h2zA	306	22.54		
1m12A	84	22.82	a.64.1.1	84745
3bqpA	80	23.35		
3bk6A	188	23.40		
1vlgA	176	23.48	a.25.1.1	108816
2q2kA	70	28.23		
2qypA	91	28.31		
1n69A	81	29.43	a.64.1.3	80118
1vp6A	138	32.95	b.82.3.2	113939
2amdA	311	33.27		
1d2fA	390	33.37	c.67.1.3	34411
2ba3A	51	33.41		
2f7tA	227	34.38		
1s3qA	173	35.27	a.25.1.1	118848
1tdzA	272	35.82	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1fadA	99	41.48	a.77.1.2	18428
2c40A	312	44.73		
2v9dA	343	46.82		
2dobA	83	48.18		
2v95A	371	49.97		
1fjrA	195	51.62	b.102.1.1	59855
2dpmA	284	53.83	c.66.1.28	34246
3cnqP	80	55.06		
2yviA	111	55.64		
2k29A	53	55.72		
1usuB	170	59.00	d.83.2.1	99886
1x93A	55	59.15		
2cihA	183	62.44		
2c8eE	211	65.29		
2qp2A	511	66.52		
1lqaA	346	71.12	c.1.7.1	84674
1krqA	167	74.44	a.25.1.1	68855
2ia7A	134	79.04		
1q8fA	313	86.40	c.70.1.1	96203