# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ca9A 148 0.004791 2bj7A 138 0.01317 a.43.1.3,d.58.18.4 128608,128609 2cpgA 45 0.1618 a.43.1.3 17455 2gpeA 52 0.5072 2c5aA 379 2.167 c.2.1.2 129894 1m2kA 249 3.456 c.31.1.5 84754 1zkcA 197 4.437 b.62.1.1 125182 2gu3A 136 4.528 2q2kA 70 4.962 2rmcA 182 5.042 b.62.1.1 27491 2bsqE 77 5.115 a.43.1.8 129102 1xo7A 166 5.361 b.62.1.1 115694 1d2fA 390 5.940 c.67.1.3 34411 1xd3A 230 6.226 d.3.1.6 115145 1oc2A 348 7.588 c.2.1.2 92765 2k29A 53 7.863 2dpmA 284 8.744 c.66.1.28 34246 2zadA 345 12.87 1uz3A 102 13.80 2cmtA 172 14.54 2q4fA 149 14.68 a.24.10.2 139847 2an7A 83 15.06 2a2nA 176 16.19 b.62.1.1 126041 1h0pA 182 16.33 b.62.1.1 76450 1p94A 76 17.89 a.43.1.3 94380 2j13A 247 18.64 c.6.2.3 137934 1zrnA 232 19.84 c.108.1.1 43323 1zgdA 312 19.95 1kt6A 183 20.29 b.60.1.1 84466 1exrA 148 20.85 a.39.1.5 17299 2cfeA 162 21.00 b.62.1.1 130375 1koeA 172 21.57 d.169.1.5 42448 1qwkA 317 23.41 c.1.7.1 96482 2bitX 165 23.59 b.62.1.1 128590 2b5tI 432 23.88 e.1.1.1 127905 1ggzA 148 24.22 a.39.1.5 70176 1wvgA 359 24.22 c.2.1.2 121339 2e8eA 132 25.32 1mxgA 435 25.47 b.71.1.1,c.1.8.1 85193,85194 1yndA 165 25.77 b.62.1.1 123721 1di1A 300 27.25 a.128.1.4 19446 1gl6A 436 28.80 c.37.1.11 70259 2d7eA 105 29.62 1n69A 81 30.82 a.64.1.3 80118 2z1mA 345 32.25 2aaoA 166 33.08 3ci0K 298 33.60 2z6wA 165 34.71 1ec7A 446 35.51 c.1.11.2,d.54.1.1 29218,38862 2pmvA 399 35.70 2ba3A 51 35.79 2amdA 311 37.53 2f3yA 148 39.76 2ds2B 72 40.28 3c8cA 240 41.00 1k3xA 262 42.55 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1x93A 55 43.44 1wy9A 147 45.25 1ds1A 324 46.48 b.82.2.2 28127 1ic8A 194 47.18 a.4.1.1,a.35.1.1 76740,76741 1y791 680 47.35 2z99A 219 47.75 2i3fA 224 47.80 2v2fF 390 47.91 1ceo 343 48.29 1satA 471 48.78 b.80.7.1,d.92.1.6 28014,40300 1uhgA 385 49.06 e.1.1.1 88491 3beeA 93 50.45 2hi2A 158 51.07 2v95A 371 51.45 3bfmA 235 52.05 3cihA 739 52.54 2qy9A 309 52.95 1y0zA 330 53.41 b.82.2.8 116317 2bkfA 87 55.21 d.15.2.2 128699 1vdlA 80 57.42 a.5.2.1 108528 2r2cA 183 57.65 2ikqA 270 59.56 1fr2A 86 59.69 a.28.2.1 83256 1bg6A 359 59.95 a.100.1.5,c.2.1.6 18810,30214 2hujA 140 60.71 a.24.26.1 136777 2vebA 195 60.93 2paqA 201 61.42 a.211.1.1 139643 2g4rA 160 62.18 1tdzA 272 63.11 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2j5cA 569 64.10 1ihgA 370 68.39 a.118.8.1,b.62.1.1 62380,62381 1gqnA 252 68.80 c.1.10.1 90514 3htsB 102 69.10 a.4.5.22 16175 1svmA 377 69.32 c.37.1.20 112126 2v9dA 343 69.45 1efpB 252 70.55 c.26.2.3 31636 2d00A 109 70.61 2rcyA 262 73.31 2i57A 438 77.17 2yweA 600 77.63 2vqeT 106 77.70 2purA 292 78.43 1umpA 631 81.51 a.102.4.2,a.102.4.2 99619,99620 2e2eA 177 83.02 2zceA 291 83.84 1r9dA 787 85.49 c.7.1.1 104865 2iorA 235 86.56 2fkzA 155 88.55 a.25.1.1 133688 2o5gA 148 89.15 2z5lA 511 89.30 2bg5A 324 89.61 1z1dA 103 89.74 a.4.5.16 124351